miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 22194 0.67 0.473414
Target:  5'- gGUGCAGGCCGAgGuGCag-GgCGAccUGCu -3'
miRNA:   3'- -UACGUCCGGUUgC-CGgaaCgGCU--ACG- -5'
11561 5' -57.6 NC_003085.1 + 34929 0.68 0.395607
Target:  5'- gGUGCAGGCgCAcGCGGCggagUUGCUGGccgGCg -3'
miRNA:   3'- -UACGUCCG-GU-UGCCGg---AACGGCUa--CG- -5'
11561 5' -57.6 NC_003085.1 + 8946 0.68 0.404878
Target:  5'- -cGCGuGGCCAACcugcgcugGGCCaaggGCCGcgGCc -3'
miRNA:   3'- uaCGU-CCGGUUG--------CCGGaa--CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 19976 0.68 0.414286
Target:  5'- -aGCAguuccuGGCCAaguACGGCCcUGCCGccGUc -3'
miRNA:   3'- uaCGU------CCGGU---UGCCGGaACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 30003 0.68 0.414286
Target:  5'- -aGC-GGCCcugGGCGGCCUUGgCGAcGUc -3'
miRNA:   3'- uaCGuCCGG---UUGCCGGAACgGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 3200 0.67 0.423827
Target:  5'- -cGCGGGCCc-UGGCCcgaUGCCGcaagGCg -3'
miRNA:   3'- uaCGUCCGGuuGCCGGa--ACGGCua--CG- -5'
11561 5' -57.6 NC_003085.1 + 35309 0.67 0.433497
Target:  5'- -aGCAGGUCGcgGCGGCU--GUCGGUGa -3'
miRNA:   3'- uaCGUCCGGU--UGCCGGaaCGGCUACg -5'
11561 5' -57.6 NC_003085.1 + 18531 0.67 0.453216
Target:  5'- uGUGCGGGCCGAUuGCCcagaaGCaCGAggugGCg -3'
miRNA:   3'- -UACGUCCGGUUGcCGGaa---CG-GCUa---CG- -5'
11561 5' -57.6 NC_003085.1 + 41391 0.67 0.463258
Target:  5'- gGUGguGGgUGACGGCCgugUUGUCGGaGCc -3'
miRNA:   3'- -UACguCCgGUUGCCGG---AACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 15174 0.69 0.334669
Target:  5'- cUGCGcugacGGCC--CGGCUgaGCCGGUGCg -3'
miRNA:   3'- uACGU-----CCGGuuGCCGGaaCGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 36027 0.69 0.334669
Target:  5'- -gGC-GGCCAugGGCac-GCCGuAUGCc -3'
miRNA:   3'- uaCGuCCGGUugCCGgaaCGGC-UACG- -5'
11561 5' -57.6 NC_003085.1 + 493 0.7 0.295519
Target:  5'- -gGCgAGGCUGAgGGCCUgcguuuggaGCCGGUGUc -3'
miRNA:   3'- uaCG-UCCGGUUgCCGGAa--------CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 7540 0.77 0.105076
Target:  5'- -cGCGGGCCGAgGGgugugacgucgaCCUUGCCGcgGCc -3'
miRNA:   3'- uaCGUCCGGUUgCC------------GGAACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 12000 0.76 0.120121
Target:  5'- cUGC-GGCagCAGCGGCCUgacgcuggcgcaccUGCCGGUGCu -3'
miRNA:   3'- uACGuCCG--GUUGCCGGA--------------ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 17833 0.72 0.234198
Target:  5'- -gGCAGGCCccuGgGGCagUGCUGGUGCc -3'
miRNA:   3'- uaCGUCCGGu--UgCCGgaACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 22241 0.71 0.239815
Target:  5'- -cGCAGGCCAacgagacgaaggaGCGGCagcagGCCGAguggaacgUGCg -3'
miRNA:   3'- uaCGUCCGGU-------------UGCCGgaa--CGGCU--------ACG- -5'
11561 5' -57.6 NC_003085.1 + 24377 0.71 0.246832
Target:  5'- -gGcCGGGCCAucaAUGGCCUggacggggccgUGCCGGUGg -3'
miRNA:   3'- uaC-GUCCGGU---UGCCGGA-----------ACGGCUACg -5'
11561 5' -57.6 NC_003085.1 + 26718 0.71 0.246832
Target:  5'- -cGCAGGgCGgugACGGCgCggcGCCGGUGCu -3'
miRNA:   3'- uaCGUCCgGU---UGCCG-Gaa-CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 18361 0.7 0.283766
Target:  5'- gGUGCAGGCCGugGaGUCgcugucccugcgcgUGCCugagGGUGCg -3'
miRNA:   3'- -UACGUCCGGUugC-CGGa-------------ACGG----CUACG- -5'
11561 5' -57.6 NC_003085.1 + 36744 0.7 0.28813
Target:  5'- uAUGCGcuaccuccccucGGCCGcCGGCCUcGCCGucgGCg -3'
miRNA:   3'- -UACGU------------CCGGUuGCCGGAaCGGCua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.