miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 29187 0.66 0.243228
Target:  5'- uGGC--AGCGCCGCgaGGaCGCgGAGcGCa -3'
miRNA:   3'- -CCGguUCGCGGCGg-CCgGCGgCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 5170 0.66 0.236774
Target:  5'- cGGCCAuccuGGCGCgGaaGGCagggcggCGCCGuGGGUa -3'
miRNA:   3'- -CCGGU----UCGCGgCggCCG-------GCGGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 31790 0.66 0.231601
Target:  5'- gGGCgAAGCGgC-CCGGCCGCucgCGAcGGa -3'
miRNA:   3'- -CCGgUUCGCgGcGGCCGGCG---GCU-CCg -5'
11563 3' -65.3 NC_003085.1 + 21175 0.66 0.235616
Target:  5'- gGGCUAcAGCGCCGuccucgacacccaaCCGGaCCcuCUGGGGCu -3'
miRNA:   3'- -CCGGU-UCGCGGC--------------GGCC-GGc-GGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 7349 0.66 0.237355
Target:  5'- gGGCUAcacGCGCCcCUGGgCGCCgcuccaguacGAGGCc -3'
miRNA:   3'- -CCGGUu--CGCGGcGGCCgGCGG----------CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 40431 0.66 0.237355
Target:  5'- aGGC---GCGCUGCCuGCCGCCGuccaGCc -3'
miRNA:   3'- -CCGguuCGCGGCGGcCGGCGGCuc--CG- -5'
11563 3' -65.3 NC_003085.1 + 11654 0.66 0.237355
Target:  5'- gGGCauuGCGCCG--GGUgGCCGAGGa -3'
miRNA:   3'- -CCGguuCGCGGCggCCGgCGGCUCCg -5'
11563 3' -65.3 NC_003085.1 + 48276 0.66 0.243228
Target:  5'- uGGUCAauGGuCGCC-CCGGCagCGUCGuAGGCc -3'
miRNA:   3'- -CCGGU--UC-GCGGcGGCCG--GCGGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 26855 0.66 0.235616
Target:  5'- cGCCAcccucgauucaggaGGCGCaccuGCCGG-CGCCGguGGGUg -3'
miRNA:   3'- cCGGU--------------UCGCGg---CGGCCgGCGGC--UCCG- -5'
11563 3' -65.3 NC_003085.1 + 45841 0.66 0.231601
Target:  5'- cGGCCAgccagucgcGGCGCaCGuCCaGGCggaGCCGgugGGGCu -3'
miRNA:   3'- -CCGGU---------UCGCG-GC-GG-CCGg--CGGC---UCCG- -5'
11563 3' -65.3 NC_003085.1 + 18735 0.66 0.236774
Target:  5'- cGCCuuccuGCGCagcauGCCGaaGCCGCCGcuggagcGGGCg -3'
miRNA:   3'- cCGGuu---CGCGg----CGGC--CGGCGGC-------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 12769 0.66 0.231601
Target:  5'- uGGCCuggGGUGauGCCccuGCCGCCGuugucGGGCa -3'
miRNA:   3'- -CCGGu--UCGCggCGGc--CGGCGGC-----UCCG- -5'
11563 3' -65.3 NC_003085.1 + 10754 0.66 0.243228
Target:  5'- cGGCCAcacgGGCGCCG--GGaagaCGCUGGGGg -3'
miRNA:   3'- -CCGGU----UCGCGGCggCCg---GCGGCUCCg -5'
11563 3' -65.3 NC_003085.1 + 40711 0.66 0.231601
Target:  5'- uGCUGGacGCGCCgguggaccucucGCCGG-CGCCgGAGGCa -3'
miRNA:   3'- cCGGUU--CGCGG------------CGGCCgGCGG-CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 45893 0.66 0.231601
Target:  5'- uGCCAcaGGCGCagguuCGCCGuGUgCGCCcagaGAGGCa -3'
miRNA:   3'- cCGGU--UCGCG-----GCGGC-CG-GCGG----CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 5559 0.66 0.237355
Target:  5'- gGGCCuGGCGCCGCgaaCGGUgcgccacgucuaCGCCcuGGUg -3'
miRNA:   3'- -CCGGuUCGCGGCG---GCCG------------GCGGcuCCG- -5'
11563 3' -65.3 NC_003085.1 + 6757 0.66 0.243228
Target:  5'- cGGCCugccGCGCCGUggCGGaCGgCGAGaGCc -3'
miRNA:   3'- -CCGGuu--CGCGGCG--GCCgGCgGCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 14780 0.66 0.231601
Target:  5'- aGGCCAaacGGCGCggggUGCaaaaGGCCGacauccuccgCGAGGCc -3'
miRNA:   3'- -CCGGU---UCGCG----GCGg---CCGGCg---------GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 1559 0.66 0.231601
Target:  5'- aGGCCGugcGCGUCGCCuGCaGuuGcGGCg -3'
miRNA:   3'- -CCGGUu--CGCGGCGGcCGgCggCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 16478 0.66 0.237355
Target:  5'- -aCCugcGCGCCGCCuucccGUCGCUGAcGGCg -3'
miRNA:   3'- ccGGuu-CGCGGCGGc----CGGCGGCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.