miRNA display CGI


Results 1 - 20 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 462 0.67 0.225965
Target:  5'- gGGCCAgccGGCGCUGuuGcagguGCCcacgGgCGAGGCu -3'
miRNA:   3'- -CCGGU---UCGCGGCggC-----CGG----CgGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 590 0.73 0.076401
Target:  5'- cGCCGcagggugucucgacuGGCGCCGUCcugGGCgCGCuCGAGGCu -3'
miRNA:   3'- cCGGU---------------UCGCGGCGG---CCG-GCG-GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 617 0.67 0.199509
Target:  5'- cGGCCAcccCGCC-CUGGCUGCCGAa-- -3'
miRNA:   3'- -CCGGUuc-GCGGcGGCCGGCGGCUccg -5'
11563 3' -65.3 NC_003085.1 + 667 0.66 0.249221
Target:  5'- cGCCcGGaCGUCGCCGGCCaccugucCCGcguccggccucGGGCg -3'
miRNA:   3'- cCGGuUC-GCGGCGGCCGGc------GGC-----------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 785 0.67 0.199509
Target:  5'- aGGCgCGGGUGgacCUGCUcaGGCCGCgccCGAGGCc -3'
miRNA:   3'- -CCG-GUUCGC---GGCGG--CCGGCG---GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 803 0.72 0.0898
Target:  5'- aGGCCAcgguggacguccgcGUGCCGCCgcaGGUCGUCGAGcGCg -3'
miRNA:   3'- -CCGGUu-------------CGCGGCGG---CCGGCGGCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 942 0.74 0.059186
Target:  5'- cGGCCGcguccgGGUGCCagacagGCC-GCUGCCGGGGCa -3'
miRNA:   3'- -CCGGU------UCGCGG------CGGcCGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 1507 0.8 0.022535
Target:  5'- cGGCCGGuGCGCCuCaCGGCCGCC-AGGCg -3'
miRNA:   3'- -CCGGUU-CGCGGcG-GCCGGCGGcUCCG- -5'
11563 3' -65.3 NC_003085.1 + 1559 0.66 0.231601
Target:  5'- aGGCCGugcGCGUCGCCuGCaGuuGcGGCg -3'
miRNA:   3'- -CCGGUu--CGCGGCGGcCGgCggCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 1584 0.69 0.154616
Target:  5'- cGCCuGGCgGCCGUgaGGCgcaccgGCCGAGGCu -3'
miRNA:   3'- cCGGuUCG-CGGCGg-CCGg-----CGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 1652 0.66 0.249221
Target:  5'- cGGCac-GCGUaCGCCGcGCCGCacuGcAGGCg -3'
miRNA:   3'- -CCGguuCGCG-GCGGC-CGGCGg--C-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 2177 0.68 0.175792
Target:  5'- --gUggGCGCCGauGG-CGCCGAGGUg -3'
miRNA:   3'- ccgGuuCGCGGCggCCgGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 2313 0.69 0.146812
Target:  5'- uGGCCugccuCGCCaCCGGCCGCCGcuucaucGGUu -3'
miRNA:   3'- -CCGGuuc--GCGGcGGCCGGCGGCu------CCG- -5'
11563 3' -65.3 NC_003085.1 + 2367 0.73 0.078493
Target:  5'- aGGCCAGcgccGUGCUGCCGGagcccgcgaagaaguCCGCgaCGAGGCc -3'
miRNA:   3'- -CCGGUU----CGCGGCGGCC---------------GGCG--GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 2963 0.68 0.184962
Target:  5'- cGUCAAGCGCgCGgUGGUuuCGUCGAGcGCg -3'
miRNA:   3'- cCGGUUCGCG-GCgGCCG--GCGGCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 3568 0.8 0.022535
Target:  5'- cGGCCGGGCggcaaGCgCGCCucGCUGCCGAGGCg -3'
miRNA:   3'- -CCGGUUCG-----CG-GCGGc-CGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 3641 0.71 0.105411
Target:  5'- aGCgAGGCGCgcuugCGcCCGGCCGCCuugagcgugguccaaGGGGCg -3'
miRNA:   3'- cCGgUUCGCG-----GC-GGCCGGCGG---------------CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 3773 0.68 0.18356
Target:  5'- uGGCaCGucGCGCUGCgUGGCCGCaucccaacgcaacuCGAGGUc -3'
miRNA:   3'- -CCG-GUu-CGCGGCG-GCCGGCG--------------GCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 3934 0.71 0.098881
Target:  5'- aGCCGAGCGCCG-CGGCgauguUGUCGcGGCc -3'
miRNA:   3'- cCGGUUCGCGGCgGCCG-----GCGGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 3937 0.69 0.150668
Target:  5'- cGGCgGGcGCGCCGUCGaCgCGCCGuGGUc -3'
miRNA:   3'- -CCGgUU-CGCGGCGGCcG-GCGGCuCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.