Results 1 - 20 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11563 | 3' | -65.3 | NC_003085.1 | + | 40810 | 0.71 | 0.098092 |
Target: 5'- aGGCCAcGCGCgucccgGCCGGCCuguaccugacggcgGCCG-GGCu -3' miRNA: 3'- -CCGGUuCGCGg-----CGGCCGG--------------CGGCuCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 11816 | 0.73 | 0.071596 |
Target: 5'- cGCCGGGUGCC-CCGa-CGCUGAGGCg -3' miRNA: 3'- cCGGUUCGCGGcGGCcgGCGGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 590 | 0.73 | 0.076401 |
Target: 5'- cGCCGcagggugucucgacuGGCGCCGUCcugGGCgCGCuCGAGGCu -3' miRNA: 3'- cCGGU---------------UCGCGGCGG---CCG-GCG-GCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 803 | 0.72 | 0.0898 |
Target: 5'- aGGCCAcgguggacguccgcGUGCCGCCgcaGGUCGUCGAGcGCg -3' miRNA: 3'- -CCGGUu-------------CGCGGCGG---CCGGCGGCUC-CG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 8965 | 0.72 | 0.091012 |
Target: 5'- gGGCCAAGgGCCG-CGGCCcGCgGAcuucaccGGCc -3' miRNA: 3'- -CCGGUUCgCGGCgGCCGG-CGgCU-------CCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 34928 | 0.72 | 0.091256 |
Target: 5'- uGGUgCAGGCGCacgcggcggaguUGCUGGCCgGCgGAGGCg -3' miRNA: 3'- -CCG-GUUCGCG------------GCGGCCGG-CGgCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 15194 | 0.72 | 0.093734 |
Target: 5'- aGCCGGuGCGCCagcGCCGcGCCGCgGAagugGGCg -3' miRNA: 3'- cCGGUU-CGCGG---CGGC-CGGCGgCU----CCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 11533 | 0.72 | 0.096275 |
Target: 5'- cGGCCGcGCGuUCGUCGaG-CGCCGGGGCc -3' miRNA: 3'- -CCGGUuCGC-GGCGGC-CgGCGGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 25329 | 0.72 | 0.09731 |
Target: 5'- uGGCCAccgacaagguggauGGCGCgCGCUuccggacggugacgGGCaCGCCGAcGGCg -3' miRNA: 3'- -CCGGU--------------UCGCG-GCGG--------------CCG-GCGGCU-CCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 942 | 0.74 | 0.059186 |
Target: 5'- cGGCCGcguccgGGUGCCagacagGCC-GCUGCCGGGGCa -3' miRNA: 3'- -CCGGU------UCGCGG------CGGcCGGCGGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 15272 | 0.75 | 0.057593 |
Target: 5'- cGGCCGAGCucacCCGCCGcGCCcgcgucaugcugGcCCGGGGCg -3' miRNA: 3'- -CCGGUUCGc---GGCGGC-CGG------------C-GGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 8440 | 0.75 | 0.053642 |
Target: 5'- cGGCCAgcAGCaGCCGUcccugucgcucuacaUgacgcgccagaaGGCCGCCGAGGCg -3' miRNA: 3'- -CCGGU--UCG-CGGCG---------------G------------CCGGCGGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 32850 | 0.83 | 0.0122 |
Target: 5'- aGGCCGcGCGCCGCgGGaCCGCCcggGAGGCc -3' miRNA: 3'- -CCGGUuCGCGGCGgCC-GGCGG---CUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 34299 | 0.8 | 0.020161 |
Target: 5'- cGCCGAGCGUCGCgGGCagggcaCCGAGGCg -3' miRNA: 3'- cCGGUUCGCGGCGgCCGgc----GGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 1507 | 0.8 | 0.022535 |
Target: 5'- cGGCCGGuGCGCCuCaCGGCCGCC-AGGCg -3' miRNA: 3'- -CCGGUU-CGCGGcG-GCCGGCGGcUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 3568 | 0.8 | 0.022535 |
Target: 5'- cGGCCGGGCggcaaGCgCGCCucGCUGCCGAGGCg -3' miRNA: 3'- -CCGGUUCG-----CG-GCGGc-CGGCGGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 12393 | 0.77 | 0.038895 |
Target: 5'- gGGCCGGGUGCUGCUgcucgacccggcggGGCCGCUgcgcuccgagGAGGCu -3' miRNA: 3'- -CCGGUUCGCGGCGG--------------CCGGCGG----------CUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 31349 | 0.76 | 0.041899 |
Target: 5'- cGGCCGucccgcccGCGCCGacaagaagcucgaccCCGGCCGCaaaGAGGCc -3' miRNA: 3'- -CCGGUu-------CGCGGC---------------GGCCGGCGg--CUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 16335 | 0.76 | 0.042597 |
Target: 5'- gGGCgAAGCGCUGUCucuGGCCGacgacaagggcaCCGAGGCa -3' miRNA: 3'- -CCGgUUCGCGGCGG---CCGGC------------GGCUCCG- -5' |
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11563 | 3' | -65.3 | NC_003085.1 | + | 11905 | 0.76 | 0.046387 |
Target: 5'- uGGCCAGGCGCUccacguuugccgaaGCCGggaacgcauuuggucGCCGCCuGGGCg -3' miRNA: 3'- -CCGGUUCGCGG--------------CGGC---------------CGGCGGcUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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