miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 5' -52.8 NC_003085.1 + 23378 1.15 0.000634
Target:  5'- aGCACUUCGACCCCAACCAACUCCUCCa -3'
miRNA:   3'- -CGUGAAGCUGGGGUUGGUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14032 0.8 0.170781
Target:  5'- gGCGCUUCGGgCCCAGuCCGACg-CUCCg -3'
miRNA:   3'- -CGUGAAGCUgGGGUU-GGUUGagGAGG- -5'
11563 5' -52.8 NC_003085.1 + 48225 0.76 0.291115
Target:  5'- uGC-CUcCGcaGCCCCu-CCAACUCCUCCa -3'
miRNA:   3'- -CGuGAaGC--UGGGGuuGGUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6817 0.74 0.409441
Target:  5'- uCACcgUCGACccaCCCAGCCAGaggagUCCUCCa -3'
miRNA:   3'- cGUGa-AGCUG---GGGUUGGUUg----AGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 35573 0.73 0.418968
Target:  5'- cGUGCUUCGGCCggaugccuUCGugCAACUCCUUUg -3'
miRNA:   3'- -CGUGAAGCUGG--------GGUugGUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6079 0.73 0.428629
Target:  5'- uGCACcagCGGCCCCAGg-GAgUCCUCCg -3'
miRNA:   3'- -CGUGaa-GCUGGGGUUggUUgAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 21182 0.73 0.43842
Target:  5'- aGCGCcguccUCGACaCCCAACCgGAC-CCUCUg -3'
miRNA:   3'- -CGUGa----AGCUG-GGGUUGG-UUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 31688 0.73 0.43842
Target:  5'- -gACUUCaGGCCCCGcgGCCggUgCCUCCu -3'
miRNA:   3'- cgUGAAG-CUGGGGU--UGGuuGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 36746 0.72 0.485028
Target:  5'- uGCGCUaccuccccUCGGCCgCCGGCCucgccgucggcguACUCCUCg -3'
miRNA:   3'- -CGUGA--------AGCUGG-GGUUGGu------------UGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 38017 0.72 0.510267
Target:  5'- cCGCgUCGGCCCCAACggCGACcgCUUCCc -3'
miRNA:   3'- cGUGaAGCUGGGGUUG--GUUGa-GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 9072 0.72 0.510267
Target:  5'- gGUGgUUCGGCCCCAGCaagugCGGCUCCauggCCc -3'
miRNA:   3'- -CGUgAAGCUGGGGUUG-----GUUGAGGa---GG- -5'
11563 5' -52.8 NC_003085.1 + 37964 0.71 0.542552
Target:  5'- aGCGCcgUCGGCguggugCCC-ACCAGCaCCUCCg -3'
miRNA:   3'- -CGUGa-AGCUG------GGGuUGGUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 24557 0.71 0.575485
Target:  5'- -gAUggUGGCCaCCGccGCCAugUCCUCCa -3'
miRNA:   3'- cgUGaaGCUGG-GGU--UGGUugAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14983 0.7 0.586569
Target:  5'- cGCGCUggCGGCCgguGCgCAACUCCUCa -3'
miRNA:   3'- -CGUGAa-GCUGGgguUG-GUUGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 29056 0.7 0.594353
Target:  5'- aGCAg-UUGGCCaCCAGCCugagccagccuuugGACUUCUCCg -3'
miRNA:   3'- -CGUgaAGCUGG-GGUUGG--------------UUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 13284 0.7 0.597694
Target:  5'- cGCACggCGaacaucggagGCCCCAGCgAGC-CCUUCa -3'
miRNA:   3'- -CGUGaaGC----------UGGGGUUGgUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 22982 0.7 0.597694
Target:  5'- aGgGCUUCG-CCCCGGCag---CCUCCg -3'
miRNA:   3'- -CgUGAAGCuGGGGUUGguugaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 10324 0.7 0.608848
Target:  5'- uGCGaugCGGCCCCcGCC-ACgucgCCUCCc -3'
miRNA:   3'- -CGUgaaGCUGGGGuUGGuUGa---GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 49034 0.7 0.620023
Target:  5'- cGCGaccagCGACUCUucGGCCAACUCCacgUCCg -3'
miRNA:   3'- -CGUgaa--GCUGGGG--UUGGUUGAGG---AGG- -5'
11563 5' -52.8 NC_003085.1 + 32548 0.69 0.642396
Target:  5'- -aGCUUCuuGGCCUCGGCCAguaGCUCaUCCa -3'
miRNA:   3'- cgUGAAG--CUGGGGUUGGU---UGAGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.