miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 5' -52.8 NC_003085.1 + 2931 0.69 0.686939
Target:  5'- uGCGCUUCaGCaUC-AUCGGCUCCUCCc -3'
miRNA:   3'- -CGUGAAGcUGgGGuUGGUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 3021 0.67 0.762334
Target:  5'- cGCGCUU-GACgCCGuCCuGgUCCUCCu -3'
miRNA:   3'- -CGUGAAgCUGgGGUuGGuUgAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 5021 0.66 0.840017
Target:  5'- uGCGCggUgGugCCCAGCacccgccggaCGACUCUUUCg -3'
miRNA:   3'- -CGUGa-AgCugGGGUUG----------GUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6079 0.73 0.428629
Target:  5'- uGCACcagCGGCCCCAGg-GAgUCCUCCg -3'
miRNA:   3'- -CGUGaa-GCUGGGGUUggUUgAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6407 0.66 0.830989
Target:  5'- gGCAC-UCGGCa--GGCCAugguuucCUCCUCCu -3'
miRNA:   3'- -CGUGaAGCUGgggUUGGUu------GAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 6817 0.74 0.409441
Target:  5'- uCACcgUCGACccaCCCAGCCAGaggagUCCUCCa -3'
miRNA:   3'- cGUGa-AGCUG---GGGUUGGUUg----AGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 9072 0.72 0.510267
Target:  5'- gGUGgUUCGGCCCCAGCaagugCGGCUCCauggCCc -3'
miRNA:   3'- -CGUgAAGCUGGGGUUG-----GUUGAGGa---GG- -5'
11563 5' -52.8 NC_003085.1 + 10324 0.7 0.608848
Target:  5'- uGCGaugCGGCCCCcGCC-ACgucgCCUCCc -3'
miRNA:   3'- -CGUgaaGCUGGGGuUGGuUGa---GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 11695 0.66 0.84882
Target:  5'- cGCGCUgguagCaGCCCCuGCaCAGCcCCUUCg -3'
miRNA:   3'- -CGUGAa----GcUGGGGuUG-GUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 13284 0.7 0.597694
Target:  5'- cGCACggCGaacaucggagGCCCCAGCgAGC-CCUUCa -3'
miRNA:   3'- -CGUGaaGC----------UGGGGUUGgUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14032 0.8 0.170781
Target:  5'- gGCGCUUCGGgCCCAGuCCGACg-CUCCg -3'
miRNA:   3'- -CGUGAAGCUgGGGUU-GGUUGagGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14770 0.69 0.669185
Target:  5'- gGC-CUUCGGCCUUGGCCuucguccagcgccacGGCgCCUCCa -3'
miRNA:   3'- -CGuGAAGCUGGGGUUGG---------------UUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14983 0.7 0.586569
Target:  5'- cGCGCUggCGGCCgguGCgCAACUCCUCa -3'
miRNA:   3'- -CGUGAa-GCUGGgguUG-GUUGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 16581 0.67 0.802648
Target:  5'- cCACUgcgaCGACCCgGGCU-ACUUCUUCg -3'
miRNA:   3'- cGUGAa---GCUGGGgUUGGuUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 16940 0.66 0.830989
Target:  5'- gGCAa---GGCCCCGcacACCugggaaGGCUCUUCCa -3'
miRNA:   3'- -CGUgaagCUGGGGU---UGG------UUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 17744 0.66 0.812294
Target:  5'- cCGCgucgUCGGUCUCAgcGCCAGCgCCUCCc -3'
miRNA:   3'- cGUGa---AGCUGGGGU--UGGUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 18026 0.66 0.84882
Target:  5'- gGCGCUUCagguGGCCCCAGCagAGC-CCagagcgCCg -3'
miRNA:   3'- -CGUGAAG----CUGGGGUUGg-UUGaGGa-----GG- -5'
11563 5' -52.8 NC_003085.1 + 19150 0.67 0.751881
Target:  5'- cGCACUccgucCGGgCCCGgcGCCuGCUCCgCCg -3'
miRNA:   3'- -CGUGAa----GCUgGGGU--UGGuUGAGGaGG- -5'
11563 5' -52.8 NC_003085.1 + 20879 0.67 0.762334
Target:  5'- -gGCgUCcACCCCGGCaacCUCCUCCc -3'
miRNA:   3'- cgUGaAGcUGGGGUUGguuGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 21182 0.73 0.43842
Target:  5'- aGCGCcguccUCGACaCCCAACCgGAC-CCUCUg -3'
miRNA:   3'- -CGUGa----AGCUG-GGGUUGG-UUGaGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.