Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11563 | 5' | -52.8 | NC_003085.1 | + | 40395 | 0.66 | 0.821745 |
Target: 5'- gGCGCU--GGCCggCAuCCAACUCCUCa -3' miRNA: 3'- -CGUGAagCUGGg-GUuGGUUGAGGAGg -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 22740 | 0.69 | 0.686939 |
Target: 5'- aGCACU-CGGCUCCGacacccgcGCCGACgacgCCcgCCg -3' miRNA: 3'- -CGUGAaGCUGGGGU--------UGGUUGa---GGa-GG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 45571 | 0.69 | 0.686939 |
Target: 5'- cGCGCagcgCGGCCUCAAUgcgcugCAACUCCgCCu -3' miRNA: 3'- -CGUGaa--GCUGGGGUUG------GUUGAGGaGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 36984 | 0.67 | 0.762334 |
Target: 5'- cCGCUUCGACUCCAgcagggcacuGCUGGCgCC-CCa -3' miRNA: 3'- cGUGAAGCUGGGGU----------UGGUUGaGGaGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 32248 | 0.67 | 0.782814 |
Target: 5'- cGUGCUcaccagCGGCgCUGACCAACU-CUCCa -3' miRNA: 3'- -CGUGAa-----GCUGgGGUUGGUUGAgGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 44261 | 0.67 | 0.792818 |
Target: 5'- cGCGCUcggacUCGGCcugCCUGGCUugUUCCUCCc -3' miRNA: 3'- -CGUGA-----AGCUG---GGGUUGGuuGAGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 16581 | 0.67 | 0.802648 |
Target: 5'- cCACUgcgaCGACCCgGGCU-ACUUCUUCg -3' miRNA: 3'- cGUGAa---GCUGGGgUUGGuUGAGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 29952 | 0.67 | 0.802648 |
Target: 5'- gGCACa--GGCCCU--CCAGCagcCCUCCg -3' miRNA: 3'- -CGUGaagCUGGGGuuGGUUGa--GGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 45708 | 0.66 | 0.812294 |
Target: 5'- aGCACUgcguaGACgCCGcucACCAAgUCCUgCg -3' miRNA: 3'- -CGUGAag---CUGgGGU---UGGUUgAGGAgG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 49034 | 0.7 | 0.620023 |
Target: 5'- cGCGaccagCGACUCUucGGCCAACUCCacgUCCg -3' miRNA: 3'- -CGUgaa--GCUGGGG--UUGGUUGAGG---AGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 10324 | 0.7 | 0.608848 |
Target: 5'- uGCGaugCGGCCCCcGCC-ACgucgCCUCCc -3' miRNA: 3'- -CGUgaaGCUGGGGuUGGuUGa---GGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 13284 | 0.7 | 0.597694 |
Target: 5'- cGCACggCGaacaucggagGCCCCAGCgAGC-CCUUCa -3' miRNA: 3'- -CGUGaaGC----------UGGGGUUGgUUGaGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 48225 | 0.76 | 0.291115 |
Target: 5'- uGC-CUcCGcaGCCCCu-CCAACUCCUCCa -3' miRNA: 3'- -CGuGAaGC--UGGGGuuGGUUGAGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 6817 | 0.74 | 0.409441 |
Target: 5'- uCACcgUCGACccaCCCAGCCAGaggagUCCUCCa -3' miRNA: 3'- cGUGa-AGCUG---GGGUUGGUUg----AGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 6079 | 0.73 | 0.428629 |
Target: 5'- uGCACcagCGGCCCCAGg-GAgUCCUCCg -3' miRNA: 3'- -CGUGaa-GCUGGGGUUggUUgAGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 21182 | 0.73 | 0.43842 |
Target: 5'- aGCGCcguccUCGACaCCCAACCgGAC-CCUCUg -3' miRNA: 3'- -CGUGa----AGCUG-GGGUUGG-UUGaGGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 36746 | 0.72 | 0.485028 |
Target: 5'- uGCGCUaccuccccUCGGCCgCCGGCCucgccgucggcguACUCCUCg -3' miRNA: 3'- -CGUGA--------AGCUGG-GGUUGGu------------UGAGGAGg -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 9072 | 0.72 | 0.510267 |
Target: 5'- gGUGgUUCGGCCCCAGCaagugCGGCUCCauggCCc -3' miRNA: 3'- -CGUgAAGCUGGGGUUG-----GUUGAGGa---GG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 38017 | 0.72 | 0.510267 |
Target: 5'- cCGCgUCGGCCCCAACggCGACcgCUUCCc -3' miRNA: 3'- cGUGaAGCUGGGGUUG--GUUGa-GGAGG- -5' |
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11563 | 5' | -52.8 | NC_003085.1 | + | 29056 | 0.7 | 0.594353 |
Target: 5'- aGCAg-UUGGCCaCCAGCCugagccagccuuugGACUUCUCCg -3' miRNA: 3'- -CGUgaAGCUGG-GGUUGG--------------UUGAGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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