Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11567 | 3' | -57.2 | NC_003085.1 | + | 24969 | 1.08 | 0.000566 |
Target: 5'- aGUACGGCGGCAUCCUGCCGCAGAACAu -3' miRNA: 3'- -CAUGCCGCCGUAGGACGGCGUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 1043 | 0.76 | 0.137665 |
Target: 5'- -cACGGCGGCguGUCCUGCCcCGGcAGCGg -3' miRNA: 3'- caUGCCGCCG--UAGGACGGcGUC-UUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 5165 | 0.73 | 0.224749 |
Target: 5'- -gGCaGCGGcCAUCCUGgCGCGGAagGCAg -3' miRNA: 3'- caUGcCGCC-GUAGGACgGCGUCU--UGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 25809 | 0.71 | 0.268975 |
Target: 5'- cGUACuGGCGGCGauagagcccccuaUCCUcguccGUCGCAGGGCGg -3' miRNA: 3'- -CAUG-CCGCCGU-------------AGGA-----CGGCGUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 19996 | 0.71 | 0.298436 |
Target: 5'- cUugGcGCgGGCGUCgUGCgGCAGGACGu -3' miRNA: 3'- cAugC-CG-CCGUAGgACGgCGUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 18964 | 0.7 | 0.313692 |
Target: 5'- -gACGGUGGCGcgcuUCCUGC-GCAGcAACGc -3' miRNA: 3'- caUGCCGCCGU----AGGACGgCGUC-UUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 20965 | 0.7 | 0.328724 |
Target: 5'- gGUGCGGUGGCuggCCUuCCGCAaccuccuGGACAu -3' miRNA: 3'- -CAUGCCGCCGua-GGAcGGCGU-------CUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 46818 | 0.7 | 0.32953 |
Target: 5'- cUugGGCGGCAUcaCCUcGCCGCcGAguuGCGa -3' miRNA: 3'- cAugCCGCCGUA--GGA-CGGCGuCU---UGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 807 | 0.7 | 0.32953 |
Target: 5'- -cACGGUGGaCGUCCgcgugccGCCGCAGGuCGu -3' miRNA: 3'- caUGCCGCC-GUAGGa------CGGCGUCUuGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 8645 | 0.69 | 0.36295 |
Target: 5'- -gACGGCGGCAUgCCacgguuguUGCgGCGGgAGCGg -3' miRNA: 3'- caUGCCGCCGUA-GG--------ACGgCGUC-UUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 10277 | 0.69 | 0.371664 |
Target: 5'- --cUGGCGGCcUCCcGCgGguGAGCAg -3' miRNA: 3'- cauGCCGCCGuAGGaCGgCguCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 38430 | 0.69 | 0.38052 |
Target: 5'- --cCGGCGGCAUUCgUGCC-CAGGAa- -3' miRNA: 3'- cauGCCGCCGUAGG-ACGGcGUCUUgu -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 17972 | 0.69 | 0.389516 |
Target: 5'- -aGCGcCGGCAgcgCggGCCGCAGGGCAc -3' miRNA: 3'- caUGCcGCCGUa--GgaCGGCGUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 44680 | 0.69 | 0.39865 |
Target: 5'- aGUGCGGCGGgG-CCUuUCGUGGGACGg -3' miRNA: 3'- -CAUGCCGCCgUaGGAcGGCGUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 41425 | 0.68 | 0.40792 |
Target: 5'- -gAC-GCGGCccggCCUGCCGUAGAAg- -3' miRNA: 3'- caUGcCGCCGua--GGACGGCGUCUUgu -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 46749 | 0.68 | 0.40792 |
Target: 5'- -aGCGGCGGCGcUCCagGCgGCGGcgaAGCGc -3' miRNA: 3'- caUGCCGCCGU-AGGa-CGgCGUC---UUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 38158 | 0.68 | 0.40792 |
Target: 5'- --gUGGUGGCGcUCCccGCCGCGGcGCAg -3' miRNA: 3'- cauGCCGCCGU-AGGa-CGGCGUCuUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 26906 | 0.68 | 0.446308 |
Target: 5'- -gGCGGgGGCAcacgCCUGgCGCgcaGGGGCAu -3' miRNA: 3'- caUGCCgCCGUa---GGACgGCG---UCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 6326 | 0.68 | 0.446308 |
Target: 5'- -cACGGCGGCGUCgUGUaggcgucgaccaUGuCGGAGCGc -3' miRNA: 3'- caUGCCGCCGUAGgACG------------GC-GUCUUGU- -5' |
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11567 | 3' | -57.2 | NC_003085.1 | + | 9636 | 0.68 | 0.446308 |
Target: 5'- -gGCGGCGGCAggCCaaacGCCGCucuuuGGGAUg -3' miRNA: 3'- caUGCCGCCGUa-GGa---CGGCG-----UCUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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