miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 3' -57.2 NC_003085.1 + 24969 1.08 0.000566
Target:  5'- aGUACGGCGGCAUCCUGCCGCAGAACAu -3'
miRNA:   3'- -CAUGCCGCCGUAGGACGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 24707 0.66 0.571821
Target:  5'- -gACGGCGGCAUCggcgGCuuCGCGGGugccaACAc -3'
miRNA:   3'- caUGCCGCCGUAGga--CG--GCGUCU-----UGU- -5'
11567 3' -57.2 NC_003085.1 + 27402 0.66 0.571821
Target:  5'- -cGCGcGUGGUA-CCUGCcCGCGGGcGCAa -3'
miRNA:   3'- caUGC-CGCCGUaGGACG-GCGUCU-UGU- -5'
11567 3' -57.2 NC_003085.1 + 30648 0.66 0.550075
Target:  5'- cUACcGUGGCgaGUCgCUGCgGCAGGGCGc -3'
miRNA:   3'- cAUGcCGCCG--UAG-GACGgCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 1083 0.66 0.528591
Target:  5'- -gACGGUGGCugcuaCCUGCCcauccGCGGcAGCGa -3'
miRNA:   3'- caUGCCGCCGua---GGACGG-----CGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 21395 0.67 0.496977
Target:  5'- -aGCGGacucaccauCGGCcgCCUGCuguccgaggccgCGCAGAACGa -3'
miRNA:   3'- caUGCC---------GCCGuaGGACG------------GCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 27674 0.67 0.486627
Target:  5'- cUACGGCGGCgacgugcugGUgCUGUCGCGucuGGGCGu -3'
miRNA:   3'- cAUGCCGCCG---------UAgGACGGCGU---CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 9565 0.67 0.486627
Target:  5'- -gACGGCGuuuggCCUGCCGCcgccGAGCAc -3'
miRNA:   3'- caUGCCGCcgua-GGACGGCGu---CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 24433 0.68 0.460213
Target:  5'- cUACGGCGGCAUCaaccgcgcgCUGUggcccuucuggcgcuCGCAGGugGa -3'
miRNA:   3'- cAUGCCGCCGUAG---------GACG---------------GCGUCUugU- -5'
11567 3' -57.2 NC_003085.1 + 48417 0.68 0.446308
Target:  5'- --uCGGCGGCGcuggcuUCCU-CCGCAuGGACGg -3'
miRNA:   3'- cauGCCGCCGU------AGGAcGGCGU-CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 5165 0.73 0.224749
Target:  5'- -gGCaGCGGcCAUCCUGgCGCGGAagGCAg -3'
miRNA:   3'- caUGcCGCC-GUAGGACgGCGUCU--UGU- -5'
11567 3' -57.2 NC_003085.1 + 18964 0.7 0.313692
Target:  5'- -gACGGUGGCGcgcuUCCUGC-GCAGcAACGc -3'
miRNA:   3'- caUGCCGCCGU----AGGACGgCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 20965 0.7 0.328724
Target:  5'- gGUGCGGUGGCuggCCUuCCGCAaccuccuGGACAu -3'
miRNA:   3'- -CAUGCCGCCGua-GGAcGGCGU-------CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 46818 0.7 0.32953
Target:  5'- cUugGGCGGCAUcaCCUcGCCGCcGAguuGCGa -3'
miRNA:   3'- cAugCCGCCGUA--GGA-CGGCGuCU---UGU- -5'
11567 3' -57.2 NC_003085.1 + 807 0.7 0.32953
Target:  5'- -cACGGUGGaCGUCCgcgugccGCCGCAGGuCGu -3'
miRNA:   3'- caUGCCGCC-GUAGGa------CGGCGUCUuGU- -5'
11567 3' -57.2 NC_003085.1 + 17972 0.69 0.389516
Target:  5'- -aGCGcCGGCAgcgCggGCCGCAGGGCAc -3'
miRNA:   3'- caUGCcGCCGUa--GgaCGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 38158 0.68 0.40792
Target:  5'- --gUGGUGGCGcUCCccGCCGCGGcGCAg -3'
miRNA:   3'- cauGCCGCCGU-AGGa-CGGCGUCuUGU- -5'
11567 3' -57.2 NC_003085.1 + 1043 0.76 0.137665
Target:  5'- -cACGGCGGCguGUCCUGCCcCGGcAGCGg -3'
miRNA:   3'- caUGCCGCCG--UAGGACGGcGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 27101 0.66 0.560919
Target:  5'- -aAUGGCaGCGUCgaGCgCGCAGGcACAc -3'
miRNA:   3'- caUGCCGcCGUAGgaCG-GCGUCU-UGU- -5'
11567 3' -57.2 NC_003085.1 + 28438 0.66 0.560919
Target:  5'- aGUACGGUccgcgccacGGCGg--UGCCGCGGAugGc -3'
miRNA:   3'- -CAUGCCG---------CCGUaggACGGCGUCUugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.