miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 3' -57.2 NC_003085.1 + 807 0.7 0.32953
Target:  5'- -cACGGUGGaCGUCCgcgugccGCCGCAGGuCGu -3'
miRNA:   3'- caUGCCGCC-GUAGGa------CGGCGUCUuGU- -5'
11567 3' -57.2 NC_003085.1 + 1043 0.76 0.137665
Target:  5'- -cACGGCGGCguGUCCUGCCcCGGcAGCGg -3'
miRNA:   3'- caUGCCGCCG--UAGGACGGcGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 1083 0.66 0.528591
Target:  5'- -gACGGUGGCugcuaCCUGCCcauccGCGGcAGCGa -3'
miRNA:   3'- caUGCCGCCGua---GGACGG-----CGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 5165 0.73 0.224749
Target:  5'- -gGCaGCGGcCAUCCUGgCGCGGAagGCAg -3'
miRNA:   3'- caUGcCGCC-GUAGGACgGCGUCU--UGU- -5'
11567 3' -57.2 NC_003085.1 + 6326 0.68 0.446308
Target:  5'- -cACGGCGGCGUCgUGUaggcgucgaccaUGuCGGAGCGc -3'
miRNA:   3'- caUGCCGCCGUAGgACG------------GC-GUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 8044 0.67 0.507425
Target:  5'- -gAUGGCGGa--CCUGCUGCccuguGGGGCAa -3'
miRNA:   3'- caUGCCGCCguaGGACGGCG-----UCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 8645 0.69 0.36295
Target:  5'- -gACGGCGGCAUgCCacgguuguUGCgGCGGgAGCGg -3'
miRNA:   3'- caUGCCGCCGUA-GG--------ACGgCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 9221 0.66 0.517965
Target:  5'- -cGCGGCGGCGagcUCCgccaggUGCCGCucccAGAGa- -3'
miRNA:   3'- caUGCCGCCGU---AGG------ACGGCG----UCUUgu -5'
11567 3' -57.2 NC_003085.1 + 9565 0.67 0.486627
Target:  5'- -gACGGCGuuuggCCUGCCGCcgccGAGCAc -3'
miRNA:   3'- caUGCCGCcgua-GGACGGCGu---CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 9636 0.68 0.446308
Target:  5'- -gGCGGCGGCAggCCaaacGCCGCucuuuGGGAUg -3'
miRNA:   3'- caUGCCGCCGUa-GGa---CGGCG-----UCUUGu -5'
11567 3' -57.2 NC_003085.1 + 10277 0.69 0.371664
Target:  5'- --cUGGCGGCcUCCcGCgGguGAGCAg -3'
miRNA:   3'- cauGCCGCCGuAGGaCGgCguCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 12610 0.67 0.486627
Target:  5'- -cGCgGGUGGCAUCCcucUGCCGCGa---- -3'
miRNA:   3'- caUG-CCGCCGUAGG---ACGGCGUcuugu -5'
11567 3' -57.2 NC_003085.1 + 13160 0.67 0.507425
Target:  5'- -cGCGGCGuGCcaguUCCUGCUGCAa---- -3'
miRNA:   3'- caUGCCGC-CGu---AGGACGGCGUcuugu -5'
11567 3' -57.2 NC_003085.1 + 17972 0.69 0.389516
Target:  5'- -aGCGcCGGCAgcgCggGCCGCAGGGCAc -3'
miRNA:   3'- caUGCcGCCGUa--GgaCGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 18812 0.66 0.550075
Target:  5'- -gGCGGCuucGGCAUgCUGC-GCAGGAa- -3'
miRNA:   3'- caUGCCG---CCGUAgGACGgCGUCUUgu -5'
11567 3' -57.2 NC_003085.1 + 18964 0.7 0.313692
Target:  5'- -gACGGUGGCGcgcuUCCUGC-GCAGcAACGc -3'
miRNA:   3'- caUGCCGCCGU----AGGACGgCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 19996 0.71 0.298436
Target:  5'- cUugGcGCgGGCGUCgUGCgGCAGGACGu -3'
miRNA:   3'- cAugC-CG-CCGUAGgACGgCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 20059 0.66 0.539297
Target:  5'- -gACGGCGGCAgg--GCCGUacuuggccaGGAACu -3'
miRNA:   3'- caUGCCGCCGUaggaCGGCG---------UCUUGu -5'
11567 3' -57.2 NC_003085.1 + 20508 0.67 0.496977
Target:  5'- -cGCGGCGGaCAucuccUCCUGCCaGCGuuGGGCc -3'
miRNA:   3'- caUGCCGCC-GU-----AGGACGG-CGU--CUUGu -5'
11567 3' -57.2 NC_003085.1 + 20965 0.7 0.328724
Target:  5'- gGUGCGGUGGCuggCCUuCCGCAaccuccuGGACAu -3'
miRNA:   3'- -CAUGCCGCCGua-GGAcGGCGU-------CUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.