miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11572 3' -61 NC_003085.1 + 44233 0.66 0.395072
Target:  5'- -uUGGAgGCCGcuuccUGC-CGGGCCGCg- -3'
miRNA:   3'- ucGCCUaCGGCa----ACGaGCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 22862 0.66 0.377541
Target:  5'- gGGCGGGagcgGCCGUUGC-CGcuGCCGUc- -3'
miRNA:   3'- -UCGCCUa---CGGCAACGaGCc-CGGCGac -5'
11572 3' -61 NC_003085.1 + 4221 0.66 0.377541
Target:  5'- cGGCGGGUuacGCUGagcgucaGC-CGGGCCGCa- -3'
miRNA:   3'- -UCGCCUA---CGGCaa-----CGaGCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 37111 0.66 0.368974
Target:  5'- cGCGGuacagGCCGgUGUcCGGGUCGCc- -3'
miRNA:   3'- uCGCCua---CGGCaACGaGCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 3224 0.66 0.352243
Target:  5'- aGGC-GAUGCCGgcGCUaccUGGGCCGg-- -3'
miRNA:   3'- -UCGcCUACGGCaaCGA---GCCCGGCgac -5'
11572 3' -61 NC_003085.1 + 10793 0.66 0.351421
Target:  5'- cAGCGuccgcuUGCCGUcagccagUGCcucgCGGGCCGCg- -3'
miRNA:   3'- -UCGCcu----ACGGCA-------ACGa---GCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 2622 0.67 0.344892
Target:  5'- aAGCGGAgcGCUGgcucccagcuacccGCUUGGGCCGUg- -3'
miRNA:   3'- -UCGCCUa-CGGCaa------------CGAGCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 4039 0.67 0.343273
Target:  5'- aAGCGcg-GCCGUcugGCUccaucccCGGGCCGCg- -3'
miRNA:   3'- -UCGCcuaCGGCAa--CGA-------GCCCGGCGac -5'
11572 3' -61 NC_003085.1 + 23791 0.67 0.323504
Target:  5'- cGGUGGGggccgggGCCGUcuugacggaggaggcUGCUgcgCGGGCCcGCUGc -3'
miRNA:   3'- -UCGCCUa------CGGCA---------------ACGA---GCCCGG-CGAC- -5'
11572 3' -61 NC_003085.1 + 782 0.67 0.305336
Target:  5'- cGCGGGUGgaCC--UGCUCaGGCCGCg- -3'
miRNA:   3'- uCGCCUAC--GGcaACGAGcCCGGCGac -5'
11572 3' -61 NC_003085.1 + 5600 0.68 0.28796
Target:  5'- uGCGGAcgaUGCUGagugacgcgguggUGgaCGGGCUGCUGg -3'
miRNA:   3'- uCGCCU---ACGGCa------------ACgaGCCCGGCGAC- -5'
11572 3' -61 NC_003085.1 + 1289 0.68 0.276814
Target:  5'- gAGgGGAUGCCGgaGUUCucccgcguGGCCGCg- -3'
miRNA:   3'- -UCgCCUACGGCaaCGAGc-------CCGGCGac -5'
11572 3' -61 NC_003085.1 + 9658 0.69 0.244204
Target:  5'- uGGCGGAgagacGCCGgUGCUCGGcgGCgGCa- -3'
miRNA:   3'- -UCGCCUa----CGGCaACGAGCC--CGgCGac -5'
11572 3' -61 NC_003085.1 + 8931 0.69 0.244204
Target:  5'- cGUGGAUGCCGaUGCaCGucauGGCCGCc- -3'
miRNA:   3'- uCGCCUACGGCaACGaGC----CCGGCGac -5'
11572 3' -61 NC_003085.1 + 26134 0.69 0.23208
Target:  5'- cGCG---GCCGUggaaCUCGGGCUGCUGg -3'
miRNA:   3'- uCGCcuaCGGCAac--GAGCCCGGCGAC- -5'
11572 3' -61 NC_003085.1 + 25447 0.69 0.226211
Target:  5'- gAGCGGcgGCCGguuucugggUGgUCGGccGCCGCUc -3'
miRNA:   3'- -UCGCCuaCGGCa--------ACgAGCC--CGGCGAc -5'
11572 3' -61 NC_003085.1 + 22908 0.7 0.203981
Target:  5'- cGGCGGAggcUGCCGggGCgaagcccucCGaGGCCGCg- -3'
miRNA:   3'- -UCGCCU---ACGGCaaCGa--------GC-CCGGCGac -5'
11572 3' -61 NC_003085.1 + 30227 0.7 0.203981
Target:  5'- uGGCGGggGUgaCGUccUGCgUGGGCUGCUGg -3'
miRNA:   3'- -UCGCCuaCG--GCA--ACGaGCCCGGCGAC- -5'
11572 3' -61 NC_003085.1 + 6967 0.7 0.193592
Target:  5'- cAGC-GAUGCCcucuccGUUGCUCcGGCCGCUu -3'
miRNA:   3'- -UCGcCUACGG------CAACGAGcCCGGCGAc -5'
11572 3' -61 NC_003085.1 + 40493 0.71 0.16963
Target:  5'- uGGCGGgcGUCGUcgaGC-CGGaGCCGCUGa -3'
miRNA:   3'- -UCGCCuaCGGCAa--CGaGCC-CGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.