miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11576 3' -59.9 NC_003085.1 + 29392 0.66 0.428112
Target:  5'- cGGCGGUGCccuguccaauaGCGCUGGccauGGCcgAGGUGUAc -3'
miRNA:   3'- -CCGUCGCG-----------CGCGGUCu---UCG--UCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 43886 0.66 0.428112
Target:  5'- aGUAGUgGCGUGCCGGGAuGUGGGUcuucaGCAu -3'
miRNA:   3'- cCGUCG-CGCGCGGUCUU-CGUCCA-----CGU- -5'
11576 3' -59.9 NC_003085.1 + 23067 0.66 0.427166
Target:  5'- uGCGGCGCGCGCaccucuGGCugcuuggGGGUGgCAg -3'
miRNA:   3'- cCGUCGCGCGCGgucu--UCG-------UCCAC-GU- -5'
11576 3' -59.9 NC_003085.1 + 14281 0.66 0.427166
Target:  5'- cGCuuGCGCGCGggcuugucgcagcCCGGAcgcuGGCacAGGUGCAu -3'
miRNA:   3'- cCGu-CGCGCGC-------------GGUCU----UCG--UCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 37968 0.66 0.409428
Target:  5'- gGGCAGCGC-CGUC---GGCGuGGUGCc -3'
miRNA:   3'- -CCGUCGCGcGCGGucuUCGU-CCACGu -5'
11576 3' -59.9 NC_003085.1 + 16373 0.66 0.409428
Target:  5'- aGGCauuccaGGCGCGgGCaaaguuGGCAGGUGUc -3'
miRNA:   3'- -CCG------UCGCGCgCGgucu--UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 15202 0.66 0.400278
Target:  5'- cGcCAGCGcCGCGCCgcGGAAGUGGGcgagguggacuUGCGc -3'
miRNA:   3'- cC-GUCGC-GCGCGG--UCUUCGUCC-----------ACGU- -5'
11576 3' -59.9 NC_003085.1 + 14993 0.66 0.400278
Target:  5'- uGG-AGCGCcacGCGCUGGcGGCcGGUGCGc -3'
miRNA:   3'- -CCgUCGCG---CGCGGUCuUCGuCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 16337 0.66 0.400278
Target:  5'- aGUAGCGgGCGUCcuGGAGGCGGcG-GCGc -3'
miRNA:   3'- cCGUCGCgCGCGG--UCUUCGUC-CaCGU- -5'
11576 3' -59.9 NC_003085.1 + 18085 0.66 0.382375
Target:  5'- cGGCAGUGgGaguugGCCuGGAAGCGGcUGCGc -3'
miRNA:   3'- -CCGUCGCgCg----CGG-UCUUCGUCcACGU- -5'
11576 3' -59.9 NC_003085.1 + 28498 0.66 0.382375
Target:  5'- cGCAacGCGCGCGCCAuucAGGC-GGUGg- -3'
miRNA:   3'- cCGU--CGCGCGCGGUc--UUCGuCCACgu -5'
11576 3' -59.9 NC_003085.1 + 32061 0.66 0.382375
Target:  5'- aGGCAGCGCcaGCcCCAGgcGUaacGGGgGCAg -3'
miRNA:   3'- -CCGUCGCG--CGcGGUCuuCG---UCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 13791 0.67 0.373626
Target:  5'- aGGCgAGCGUGaCGCCAGucuGCguggAGGUgGCGc -3'
miRNA:   3'- -CCG-UCGCGC-GCGGUCuu-CG----UCCA-CGU- -5'
11576 3' -59.9 NC_003085.1 + 23407 0.67 0.373626
Target:  5'- cGGCGGCGCuugGCcgGCCAGA-GCGGcGUcaaGCAu -3'
miRNA:   3'- -CCGUCGCG---CG--CGGUCUuCGUC-CA---CGU- -5'
11576 3' -59.9 NC_003085.1 + 42050 0.67 0.373626
Target:  5'- cGGCgAG-GCGUGUCacugGGAAGCgcAGGUGCGu -3'
miRNA:   3'- -CCG-UCgCGCGCGG----UCUUCG--UCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 11779 0.67 0.365013
Target:  5'- cGGCGGCGcCGCGCUccGGGcgugucGGCugccccaucgccGGGUGCc -3'
miRNA:   3'- -CCGUCGC-GCGCGG--UCU------UCG------------UCCACGu -5'
11576 3' -59.9 NC_003085.1 + 5780 0.67 0.36416
Target:  5'- aGCGGCGCGUgcucuacGCCGuggccuucgucGGAGC-GGUGCGc -3'
miRNA:   3'- cCGUCGCGCG-------CGGU-----------CUUCGuCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 42266 0.67 0.356539
Target:  5'- cGGCAGgGCGCGgauucguuguuCCAGuucGCgcacguccgacAGGUGCAg -3'
miRNA:   3'- -CCGUCgCGCGC-----------GGUCuu-CG-----------UCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 23426 0.67 0.356539
Target:  5'- uGCAGCGCuuCGCCc--AGCAGGcGCAg -3'
miRNA:   3'- cCGUCGCGc-GCGGucuUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 10560 0.67 0.348204
Target:  5'- uGGCAG-GCGCaagagGCgaAGGAGCGGGcGCAg -3'
miRNA:   3'- -CCGUCgCGCG-----CGg-UCUUCGUCCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.