miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11577 3' -58.4 NC_003085.1 + 48388 0.66 0.569995
Target:  5'- -gCGCGGCGagcagcgccgcaUUGUCuGCCU-CGGCgGCg -3'
miRNA:   3'- agGCGCCGC------------AGCAG-CGGAuGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 2171 0.66 0.569995
Target:  5'- gCCGaUGGCGcCGagGUgcgGCGGCUGCg -3'
miRNA:   3'- aGGC-GCCGCaGCagCGga-UGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 45675 0.66 0.569995
Target:  5'- gCCGCuucGGCGUcCGUCaGCC-GCGAgucacggagcaCUGCg -3'
miRNA:   3'- aGGCG---CCGCA-GCAG-CGGaUGCU-----------GACG- -5'
11577 3' -58.4 NC_003085.1 + 3942 0.66 0.569995
Target:  5'- gCCGCGGCGaUGUUGUC-GCGGCc-- -3'
miRNA:   3'- aGGCGCCGCaGCAGCGGaUGCUGacg -5'
11577 3' -58.4 NC_003085.1 + 22187 0.66 0.560486
Target:  5'- gCUGCGGCGcCGggcucugcugggcgGCCUGCuuCUGCg -3'
miRNA:   3'- aGGCGCCGCaGCag------------CGGAUGcuGACG- -5'
11577 3' -58.4 NC_003085.1 + 4104 0.66 0.559432
Target:  5'- -gCGCGGUGgCGUCGUC-ACGGCa-- -3'
miRNA:   3'- agGCGCCGCaGCAGCGGaUGCUGacg -5'
11577 3' -58.4 NC_003085.1 + 21601 0.66 0.559432
Target:  5'- gUCaCGCagGGCGUCaG-CGCCgcgACGACggGCu -3'
miRNA:   3'- -AG-GCG--CCGCAG-CaGCGGa--UGCUGa-CG- -5'
11577 3' -58.4 NC_003085.1 + 26590 0.66 0.548924
Target:  5'- gUCCgGCGGCGacacgcucuucuUCGaccgUCGCCUccuCGuCUGCg -3'
miRNA:   3'- -AGG-CGCCGC------------AGC----AGCGGAu--GCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 43357 0.66 0.548924
Target:  5'- cUUCGCGGCGUCGUag---GCGGCaaGCa -3'
miRNA:   3'- -AGGCGCCGCAGCAgcggaUGCUGa-CG- -5'
11577 3' -58.4 NC_003085.1 + 27001 0.66 0.538478
Target:  5'- aCCGCGaGUGgugcaCGg-GCCUugGugUGCc -3'
miRNA:   3'- aGGCGC-CGCa----GCagCGGAugCugACG- -5'
11577 3' -58.4 NC_003085.1 + 45949 0.66 0.538478
Target:  5'- gUCCGCGuaGagcuuguacagCGUCGCCUugGgGCgGCa -3'
miRNA:   3'- -AGGCGCcgCa----------GCAGCGGAugC-UGaCG- -5'
11577 3' -58.4 NC_003085.1 + 6325 0.66 0.535358
Target:  5'- aCgGCGGCGUCGUguaggcgucgaccaUGUCggaGCGcCUGCc -3'
miRNA:   3'- aGgCGCCGCAGCA--------------GCGGa--UGCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 28961 0.66 0.528102
Target:  5'- cUCUGCuGa---GaCGCCUGCGACUGCu -3'
miRNA:   3'- -AGGCGcCgcagCaGCGGAUGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 45776 0.66 0.528101
Target:  5'- -aCGCGGCGUCaggacUCGCCgcgcCGuccCUGCc -3'
miRNA:   3'- agGCGCCGCAGc----AGCGGau--GCu--GACG- -5'
11577 3' -58.4 NC_003085.1 + 19056 0.66 0.528101
Target:  5'- uUCCGCGGCGcgCGgcggagcaggCGCCgggcccggACGGagUGCg -3'
miRNA:   3'- -AGGCGCCGCa-GCa---------GCGGa-------UGCUg-ACG- -5'
11577 3' -58.4 NC_003085.1 + 32154 0.66 0.528101
Target:  5'- -gCGCGGUGgguuacggCGUCgGCCa--GGCUGCg -3'
miRNA:   3'- agGCGCCGCa-------GCAG-CGGaugCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 7462 0.66 0.5178
Target:  5'- cCCGgugGGCGUCG-CGCCUcACG-CUGg -3'
miRNA:   3'- aGGCg--CCGCAGCaGCGGA-UGCuGACg -5'
11577 3' -58.4 NC_003085.1 + 45118 0.66 0.5178
Target:  5'- -gCGCGGCGuaggcauugccgUCGUCGUCgACGAagaggUGCa -3'
miRNA:   3'- agGCGCCGC------------AGCAGCGGaUGCUg----ACG- -5'
11577 3' -58.4 NC_003085.1 + 48157 0.66 0.5178
Target:  5'- -gCGCGGCGUCG-CGCUcACGcUUGa -3'
miRNA:   3'- agGCGCCGCAGCaGCGGaUGCuGACg -5'
11577 3' -58.4 NC_003085.1 + 23069 0.67 0.50758
Target:  5'- aCUGCGGCG-CG-CGCacCUcUGGCUGCu -3'
miRNA:   3'- aGGCGCCGCaGCaGCG--GAuGCUGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.