miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11577 3' -58.4 NC_003085.1 + 2171 0.66 0.569995
Target:  5'- gCCGaUGGCGcCGagGUgcgGCGGCUGCg -3'
miRNA:   3'- aGGC-GCCGCaGCagCGga-UGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 30088 0.69 0.367022
Target:  5'- gCCGCGGaCGaCGUCGCCaa-GGCcGCc -3'
miRNA:   3'- aGGCGCC-GCaGCAGCGGaugCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 29183 0.7 0.318784
Target:  5'- uUCCGCGccGCGUCGcCGCUgcUGACgccggGCa -3'
miRNA:   3'- -AGGCGC--CGCAGCaGCGGauGCUGa----CG- -5'
11577 3' -58.4 NC_003085.1 + 39166 0.77 0.118976
Target:  5'- aCUGCGGCGggagCGUUGCCUAUgcggaGGCUGUu -3'
miRNA:   3'- aGGCGCCGCa---GCAGCGGAUG-----CUGACG- -5'
11577 3' -58.4 NC_003085.1 + 6325 0.66 0.535358
Target:  5'- aCgGCGGCGUCGUguaggcgucgaccaUGUCggaGCGcCUGCc -3'
miRNA:   3'- aGgCGCCGCAGCA--------------GCGGa--UGCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 28961 0.66 0.528102
Target:  5'- cUCUGCuGa---GaCGCCUGCGACUGCu -3'
miRNA:   3'- -AGGCGcCgcagCaGCGGAUGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 44220 0.67 0.487403
Target:  5'- cUCCGCGaGCG-CGUgGCC-ACG-CUGg -3'
miRNA:   3'- -AGGCGC-CGCaGCAgCGGaUGCuGACg -5'
11577 3' -58.4 NC_003085.1 + 19609 0.67 0.477458
Target:  5'- cUCCGCgucgGGCGcCGUcCGCUg--GGCUGCu -3'
miRNA:   3'- -AGGCG----CCGCaGCA-GCGGaugCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 5404 0.68 0.448246
Target:  5'- cUCCGCGGCcacgcgcuucUCgGUCGCCUucaggACGGC-GCg -3'
miRNA:   3'- -AGGCGCCGc---------AG-CAGCGGA-----UGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 15271 0.69 0.367022
Target:  5'- uUCCGCGGCG-CGgCGCUgGCGcACcgGCu -3'
miRNA:   3'- -AGGCGCCGCaGCaGCGGaUGC-UGa-CG- -5'
11577 3' -58.4 NC_003085.1 + 31678 0.68 0.42933
Target:  5'- cCCGCGGCcggUGcCuCCUGgGGCUGCa -3'
miRNA:   3'- aGGCGCCGca-GCaGcGGAUgCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 22144 0.67 0.467614
Target:  5'- uUCCGCGGCGgCGaUgGCCUuguccaacACGccuucgaugguGCUGCu -3'
miRNA:   3'- -AGGCGCCGCaGC-AgCGGA--------UGC-----------UGACG- -5'
11577 3' -58.4 NC_003085.1 + 22187 0.66 0.560486
Target:  5'- gCUGCGGCGcCGggcucugcugggcgGCCUGCuuCUGCg -3'
miRNA:   3'- aGGCGCCGCaGCag------------CGGAUGcuGACG- -5'
11577 3' -58.4 NC_003085.1 + 38921 0.68 0.410893
Target:  5'- gCCGC-GCGcCGUCGCagugggACGACgcgGCa -3'
miRNA:   3'- aGGCGcCGCaGCAGCGga----UGCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 21601 0.66 0.559432
Target:  5'- gUCaCGCagGGCGUCaG-CGCCgcgACGACggGCu -3'
miRNA:   3'- -AG-GCG--CCGCAG-CaGCGGa--UGCUGa-CG- -5'
11577 3' -58.4 NC_003085.1 + 12975 0.67 0.477458
Target:  5'- gCCGUGGCGggGUCGCC----AUUGCa -3'
miRNA:   3'- aGGCGCCGCagCAGCGGaugcUGACG- -5'
11577 3' -58.4 NC_003085.1 + 48188 0.69 0.375535
Target:  5'- aCUGCuGGCGaCGUUGCCgccaagUACGACaGCg -3'
miRNA:   3'- aGGCG-CCGCaGCAGCGG------AUGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 29236 0.7 0.350399
Target:  5'- aCUGCGgguccaaccGCGaCGUCGCCUGCGAguagGCg -3'
miRNA:   3'- aGGCGC---------CGCaGCAGCGGAUGCUga--CG- -5'
11577 3' -58.4 NC_003085.1 + 4104 0.66 0.559432
Target:  5'- -gCGCGGUGgCGUCGUC-ACGGCa-- -3'
miRNA:   3'- agGCGCCGCaGCAGCGGaUGCUGacg -5'
11577 3' -58.4 NC_003085.1 + 23069 0.67 0.50758
Target:  5'- aCUGCGGCG-CG-CGCacCUcUGGCUGCu -3'
miRNA:   3'- aGGCGCCGCaGCaGCG--GAuGCUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.