miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11583 5' -60.2 NC_003085.1 + 19158 0.66 0.440499
Target:  5'- gGGUGCGGC--GCAcuCCGUccGGGCCCGGc -3'
miRNA:   3'- -CCACGCUGucCGUc-GGCG--UCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 36475 0.66 0.431084
Target:  5'- aGUGCcACuGGCGGCuuuaggguuggaCGCAGuCCCGGu -3'
miRNA:   3'- cCACGcUGuCCGUCG------------GCGUCuGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 16737 0.66 0.431084
Target:  5'- aGGU-CGACAGGCAGC-GCccguCCUGAa -3'
miRNA:   3'- -CCAcGCUGUCCGUCGgCGucu-GGGCU- -5'
11583 5' -60.2 NC_003085.1 + 42014 0.66 0.430149
Target:  5'- cGGUgGCGGCaagugGGGCcauGCCGUGGgcacgggcuacacGCCCGAg -3'
miRNA:   3'- -CCA-CGCUG-----UCCGu--CGGCGUC-------------UGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 21025 0.66 0.428283
Target:  5'- --cGCGGacGGCAGCCGCAaucucugggcuuccGuCCCGAa -3'
miRNA:   3'- ccaCGCUguCCGUCGGCGU--------------CuGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 9741 0.66 0.420865
Target:  5'- cGGUGCucGACGuuGGCGGCCGUcccaaucuucacaGGGCCaccaGAc -3'
miRNA:   3'- -CCACG--CUGU--CCGUCGGCG-------------UCUGGg---CU- -5'
11583 5' -60.2 NC_003085.1 + 13929 0.66 0.412614
Target:  5'- cGG-GCG-CGGGUuGCCGCAcAUCCGGc -3'
miRNA:   3'- -CCaCGCuGUCCGuCGGCGUcUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 45754 0.66 0.412614
Target:  5'- --cGUGACucGCGGCUGaCGGACgCCGAa -3'
miRNA:   3'- ccaCGCUGucCGUCGGC-GUCUG-GGCU- -5'
11583 5' -60.2 NC_003085.1 + 38983 0.66 0.412614
Target:  5'- cGGUGaGAC-GGCc-CCGCAGAUUCGAg -3'
miRNA:   3'- -CCACgCUGuCCGucGGCGUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 16551 0.66 0.412614
Target:  5'- --aGCGACgggaAGGCGGCgCGCAGGUCgGAc -3'
miRNA:   3'- ccaCGCUG----UCCGUCG-GCGUCUGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 34522 0.66 0.410794
Target:  5'- --gGCGACAGcgucagcaacacaGCGGCCGCGagcgccaccagccGGCCCGc -3'
miRNA:   3'- ccaCGCUGUC-------------CGUCGGCGU-------------CUGGGCu -5'
11583 5' -60.2 NC_003085.1 + 10532 0.66 0.402666
Target:  5'- --aGcCGAgGGGCGccaaagcGCCGCGGAgCCGAc -3'
miRNA:   3'- ccaC-GCUgUCCGU-------CGGCGUCUgGGCU- -5'
11583 5' -60.2 NC_003085.1 + 41561 0.67 0.39464
Target:  5'- --cGCGGC-GGCAGUCGCGGgaGCCaGAg -3'
miRNA:   3'- ccaCGCUGuCCGUCGGCGUC--UGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 2079 0.67 0.385846
Target:  5'- cGGUgacGCGACgAGcGCAGCCGCcGcACCuCGGc -3'
miRNA:   3'- -CCA---CGCUG-UC-CGUCGGCGuC-UGG-GCU- -5'
11583 5' -60.2 NC_003085.1 + 27342 0.67 0.385846
Target:  5'- --aGCGGucCAGGUAuCCGUAGACUCGGa -3'
miRNA:   3'- ccaCGCU--GUCCGUcGGCGUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 9644 0.67 0.377181
Target:  5'- cGGUGCuc--GGCGGCgGCAGGCCa-- -3'
miRNA:   3'- -CCACGcuguCCGUCGgCGUCUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 25557 0.67 0.376322
Target:  5'- --aGCGggcagaaGCAGGCGGgCGCGGACCg-- -3'
miRNA:   3'- ccaCGC-------UGUCCGUCgGCGUCUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 45813 0.67 0.36025
Target:  5'- uGGUGaCGacGCAGGCAGCacccgCGCAGgACuuGGu -3'
miRNA:   3'- -CCAC-GC--UGUCCGUCG-----GCGUC-UGggCU- -5'
11583 5' -60.2 NC_003085.1 + 22779 0.67 0.36025
Target:  5'- cGGUgGCGAC-GGCAGCgGCAacGGCCg-- -3'
miRNA:   3'- -CCA-CGCUGuCCGUCGgCGU--CUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 25156 0.68 0.343856
Target:  5'- cGGUGUGGCcGGCGaCCGU-GGCCUGGu -3'
miRNA:   3'- -CCACGCUGuCCGUcGGCGuCUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.