Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11583 | 5' | -60.2 | NC_003085.1 | + | 30938 | 1.06 | 0.000472 |
Target: 5'- aGUGCGACAGGCAGCCGCAGACCCGAg -3' miRNA: 3'- cCACGCUGUCCGUCGGCGUCUGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 32131 | 0.8 | 0.047543 |
Target: 5'- uGGUGCGACggGGGCGGCUGguGGCgCGGu -3' miRNA: 3'- -CCACGCUG--UCCGUCGGCguCUGgGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 19066 | 0.74 | 0.126416 |
Target: 5'- --cGCGGCGGaGCAGgCGcCGGGCCCGGa -3' miRNA: 3'- ccaCGCUGUC-CGUCgGC-GUCUGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 6774 | 0.74 | 0.137142 |
Target: 5'- gGGUGCGGugcaGGGCGGCCGCAaGCCg-- -3' miRNA: 3'- -CCACGCUg---UCCGUCGGCGUcUGGgcu -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 23306 | 0.73 | 0.144751 |
Target: 5'- cGGUGCGAagcgcGGCGGCCGUcuGGagcaGCCCGGc -3' miRNA: 3'- -CCACGCUgu---CCGUCGGCG--UC----UGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 26227 | 0.73 | 0.161135 |
Target: 5'- gGGUccGCGACGucGGUGGCCaGCAG-CCCGAg -3' miRNA: 3'- -CCA--CGCUGU--CCGUCGG-CGUCuGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 12081 | 0.72 | 0.183952 |
Target: 5'- aGGUGCGccagcguCAGGCcgcugcuGCCGCAGGCCaagaGGa -3' miRNA: 3'- -CCACGCu------GUCCGu------CGGCGUCUGGg---CU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 15344 | 0.71 | 0.198976 |
Target: 5'- gGGcGCGGCGGGUgagcucGGCCGCGGcCuCCGGg -3' miRNA: 3'- -CCaCGCUGUCCG------UCGGCGUCuG-GGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 40503 | 0.71 | 0.204217 |
Target: 5'- uGGacgGCGGCAGGCAGCgCGCc--UCCGAa -3' miRNA: 3'- -CCa--CGCUGUCCGUCG-GCGucuGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 11867 | 0.71 | 0.204217 |
Target: 5'- --gGCGAUgGGGCAGCCGaCAcGCCCGGa -3' miRNA: 3'- ccaCGCUG-UCCGUCGGC-GUcUGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 14278 | 0.7 | 0.226389 |
Target: 5'- -uUGCGcGCGGGCuuGUCGCAG-CCCGGa -3' miRNA: 3'- ccACGC-UGUCCGu-CGGCGUCuGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 17828 | 0.7 | 0.234618 |
Target: 5'- uGUGCGGCAGGCcccuggggcagugcuGGugcCCGCAGGCgCCGu -3' miRNA: 3'- cCACGCUGUCCG---------------UC---GGCGUCUG-GGCu -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 39076 | 0.69 | 0.263435 |
Target: 5'- cGGUGUGAacagccuccgcaUAGGCAacgcucccGCCGCAGuCCUGGc -3' miRNA: 3'- -CCACGCU------------GUCCGU--------CGGCGUCuGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 15938 | 0.69 | 0.270068 |
Target: 5'- cGUGUGACAGGCucGGCUGguGGCgCu- -3' miRNA: 3'- cCACGCUGUCCG--UCGGCguCUGgGcu -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 31295 | 0.69 | 0.276835 |
Target: 5'- cGGUaaGCG-CGGGCAGgCGC--GCCCGAc -3' miRNA: 3'- -CCA--CGCuGUCCGUCgGCGucUGGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 46919 | 0.69 | 0.295781 |
Target: 5'- --cGCGGCAGGCGGCacagguucggcgcgCGCAGgGgCCGAc -3' miRNA: 3'- ccaCGCUGUCCGUCG--------------GCGUC-UgGGCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 33425 | 0.69 | 0.297947 |
Target: 5'- aGGUGaugGGCAGGCAgGUCaCGGACCgGAu -3' miRNA: 3'- -CCACg--CUGUCCGU-CGGcGUCUGGgCU- -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 22897 | 0.69 | 0.297947 |
Target: 5'- uGGUGCGACuccggcggAGGCuGCCGgGGcgaaGCCCu- -3' miRNA: 3'- -CCACGCUG--------UCCGuCGGCgUC----UGGGcu -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 36952 | 0.68 | 0.305256 |
Target: 5'- ---uCGACAGGCagGGCCGCGGGgCCa- -3' miRNA: 3'- ccacGCUGUCCG--UCGGCGUCUgGGcu -5' |
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11583 | 5' | -60.2 | NC_003085.1 | + | 1786 | 0.68 | 0.305256 |
Target: 5'- aGUGgGACAGGUGGCCcguugGCuGGCCgGGa -3' miRNA: 3'- cCACgCUGUCCGUCGG-----CGuCUGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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