miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 31795 1.07 0.000157
Target:  5'- aAGCGGCCCGGCCGCUCGCGACGGACAc -3'
miRNA:   3'- -UCGCCGGGCCGGCGAGCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 26679 0.76 0.045967
Target:  5'- gAGCGGCCguuGCCGCUgccgucgccacCGCGGCGGGCGu -3'
miRNA:   3'- -UCGCCGGgc-CGGCGA-----------GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 47955 0.75 0.057272
Target:  5'- uGGCGGCcgugaggcgcaCCGGCCgagGCUgGCGACGGugAc -3'
miRNA:   3'- -UCGCCG-----------GGCCGG---CGAgCGCUGCCugU- -5'
11585 5' -65.1 NC_003085.1 + 25237 0.73 0.075231
Target:  5'- cGGCGccGCCCuGGUgCGCUcCGCGGCGGGCGu -3'
miRNA:   3'- -UCGC--CGGG-CCG-GCGA-GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 22791 0.73 0.077299
Target:  5'- cAGCGGCaaCGGCCGCUCccgcccaggagGCGACGGcCc -3'
miRNA:   3'- -UCGCCGg-GCCGGCGAG-----------CGCUGCCuGu -5'
11585 5' -65.1 NC_003085.1 + 15845 0.72 0.088482
Target:  5'- uGGUGGCCCagacuucgaaGGCCGUUgGCGugGG-CAc -3'
miRNA:   3'- -UCGCCGGG----------CCGGCGAgCGCugCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 4607 0.72 0.093373
Target:  5'- gAG-GGCCCuGCCGUuuucgUCGUGACGGGCu -3'
miRNA:   3'- -UCgCCGGGcCGGCG-----AGCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 10178 0.71 0.101191
Target:  5'- gGGCGGaCCCGGCUGCaaugCGCGACcuGCu -3'
miRNA:   3'- -UCGCC-GGGCCGGCGa---GCGCUGccUGu -5'
11585 5' -65.1 NC_003085.1 + 19689 0.71 0.103932
Target:  5'- uGGCGGCCCuGGagGCgCGCGGCGG-CAu -3'
miRNA:   3'- -UCGCCGGG-CCggCGaGCGCUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 6756 0.71 0.109625
Target:  5'- -cCGGCCU-GCCGCgcCGUGGCGGACGg -3'
miRNA:   3'- ucGCCGGGcCGGCGa-GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 37229 0.71 0.109625
Target:  5'- uGGCGGCCCaGCCGC-CGCGcucaagGCaGGCGu -3'
miRNA:   3'- -UCGCCGGGcCGGCGaGCGC------UGcCUGU- -5'
11585 5' -65.1 NC_003085.1 + 41047 0.71 0.112579
Target:  5'- gGGCGGCUUggcgGGCUGCUaCGCGACuggGGGCu -3'
miRNA:   3'- -UCGCCGGG----CCGGCGA-GCGCUG---CCUGu -5'
11585 5' -65.1 NC_003085.1 + 23216 0.71 0.112579
Target:  5'- cAGUGGCCgGGCUGCUC-CaGACGGcCGc -3'
miRNA:   3'- -UCGCCGGgCCGGCGAGcG-CUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 19994 0.7 0.121895
Target:  5'- -aCGGCCCuGCCGCcgUCGuCGugGGGCc -3'
miRNA:   3'- ucGCCGGGcCGGCG--AGC-GCugCCUGu -5'
11585 5' -65.1 NC_003085.1 + 5372 0.7 0.125157
Target:  5'- cGuCGG-CUGGCCGCg-GCGAUGGACGg -3'
miRNA:   3'- uC-GCCgGGCCGGCGagCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 35388 0.7 0.128499
Target:  5'- cGGCGGaguCCGaGgCGCUCGCagauggccucGACGGACAc -3'
miRNA:   3'- -UCGCCg--GGC-CgGCGAGCG----------CUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 29000 0.7 0.128499
Target:  5'- cGUGuGCCacuucuccagCGGCuCGCgCGCGGCGGACAu -3'
miRNA:   3'- uCGC-CGG----------GCCG-GCGaGCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 45103 0.7 0.131924
Target:  5'- cGUGGUCCaGGUCGCgCGCGGCGuaGGCAu -3'
miRNA:   3'- uCGCCGGG-CCGGCGaGCGCUGC--CUGU- -5'
11585 5' -65.1 NC_003085.1 + 18119 0.7 0.139027
Target:  5'- uGGCGGCCuacCGGUaCGUcCGCG-CGGACAa -3'
miRNA:   3'- -UCGCCGG---GCCG-GCGaGCGCuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 34348 0.69 0.142708
Target:  5'- cGCGGCgCGGCgcuccaucCGCUCGuCGAgGGugAg -3'
miRNA:   3'- uCGCCGgGCCG--------GCGAGC-GCUgCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.