miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 1501 0.68 0.184693
Target:  5'- cGCGGCCCGuCCGg-CGCu-CGGGCAa -3'
miRNA:   3'- uCGCCGGGCcGGCgaGCGcuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 1944 0.67 0.204349
Target:  5'- cGuCGGUCCcgguGGCCGUaUCGCaguGGCGGACAc -3'
miRNA:   3'- uC-GCCGGG----CCGGCG-AGCG---CUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 3565 0.66 0.236631
Target:  5'- aGGCGGCCgGGCgGCaagCGCGccucgcugccgagGCGG-CGa -3'
miRNA:   3'- -UCGCCGGgCCGgCGa--GCGC-------------UGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 3958 0.67 0.206411
Target:  5'- cGCGGCCCGGggaUggagccagacggccgCGCUUGCGAgCGcGACAc -3'
miRNA:   3'- uCGCCGGGCC---G---------------GCGAGCGCU-GC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 4522 0.69 0.146479
Target:  5'- aGGCGuuugaGCCCGGCUGCaUCGgCGGC-GACAa -3'
miRNA:   3'- -UCGC-----CGGGCCGGCG-AGC-GCUGcCUGU- -5'
11585 5' -65.1 NC_003085.1 + 4607 0.72 0.093373
Target:  5'- gAG-GGCCCuGCCGUuuucgUCGUGACGGGCu -3'
miRNA:   3'- -UCgCCGGGcCGGCG-----AGCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 5227 0.68 0.194303
Target:  5'- cGCGGCCCGGCaggaaGCggccuccaaCGCGAaugGGugGc -3'
miRNA:   3'- uCGCCGGGCCGg----CGa--------GCGCUg--CCugU- -5'
11585 5' -65.1 NC_003085.1 + 5372 0.7 0.125157
Target:  5'- cGuCGG-CUGGCCGCg-GCGAUGGACGg -3'
miRNA:   3'- uC-GCCgGGCCGGCGagCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 5501 0.66 0.243104
Target:  5'- uGgGGCCgGGCCGUgagggagcaCGUGAacgaGGACAc -3'
miRNA:   3'- uCgCCGGgCCGGCGa--------GCGCUg---CCUGU- -5'
11585 5' -65.1 NC_003085.1 + 5727 0.68 0.194303
Target:  5'- gGGCGGaCCCGGCucggguguccCGCgUCGauugggccauUGACGGACGu -3'
miRNA:   3'- -UCGCC-GGGCCG----------GCG-AGC----------GCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 6442 0.66 0.261505
Target:  5'- -aCGGCCCGGUugguagagguguUGCUgGCGAagaUGGACu -3'
miRNA:   3'- ucGCCGGGCCG------------GCGAgCGCU---GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 6756 0.71 0.109625
Target:  5'- -cCGGCCU-GCCGCgcCGUGGCGGACGg -3'
miRNA:   3'- ucGCCGGGcCGGCGa-GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 8112 0.69 0.154293
Target:  5'- cGCGGCCCGGCCuGC-CGUaGAaggccaagucccCGGGCu -3'
miRNA:   3'- uCGCCGGGCCGG-CGaGCG-CU------------GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 9499 0.66 0.255248
Target:  5'- cGCGGUgacgaUGGCgGCgCGCGGCGGGuCAu -3'
miRNA:   3'- uCGCCGg----GCCGgCGaGCGCUGCCU-GU- -5'
11585 5' -65.1 NC_003085.1 + 10178 0.71 0.101191
Target:  5'- gGGCGGaCCCGGCUGCaaugCGCGACcuGCu -3'
miRNA:   3'- -UCGCC-GGGCCGGCGa---GCGCUGccUGu -5'
11585 5' -65.1 NC_003085.1 + 11040 0.68 0.189444
Target:  5'- gAGacaGGCCCGGa--CUUGUGACGGGCu -3'
miRNA:   3'- -UCg--CCGGGCCggcGAGCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 13441 0.66 0.241324
Target:  5'- cGGCGuGCCCauGGCCGCcauccgccaagcugUCGCGGagcguuuccUGGGCGu -3'
miRNA:   3'- -UCGC-CGGG--CCGGCG--------------AGCGCU---------GCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 13587 0.68 0.171064
Target:  5'- cGCGGCCCGG-UGUcaUCGCGuACuGGACc -3'
miRNA:   3'- uCGCCGGGCCgGCG--AGCGC-UG-CCUGu -5'
11585 5' -65.1 NC_003085.1 + 14915 0.67 0.214841
Target:  5'- cGCGGgCCGGCugguggCGCUCGCGGCc---- -3'
miRNA:   3'- uCGCCgGGCCG------GCGAGCGCUGccugu -5'
11585 5' -65.1 NC_003085.1 + 15845 0.72 0.088482
Target:  5'- uGGUGGCCCagacuucgaaGGCCGUUgGCGugGG-CAc -3'
miRNA:   3'- -UCGCCGGG----------CCGGCGAgCGCugCCuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.