miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 18791 0.66 0.243104
Target:  5'- aGGCGGCU--GUCGCUgaGCGACGaGACGu -3'
miRNA:   3'- -UCGCCGGgcCGGCGAg-CGCUGC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 44241 0.68 0.180046
Target:  5'- cGCuuccuGCCgGGCCGCgUCGCGcuCGGACu -3'
miRNA:   3'- uCGc----CGGgCCGGCG-AGCGCu-GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 41358 0.68 0.180046
Target:  5'- cGGCaGGCCgGGCCGCgucacccaCGUcauGACGGugGu -3'
miRNA:   3'- -UCG-CCGGgCCGGCGa-------GCG---CUGCCugU- -5'
11585 5' -65.1 NC_003085.1 + 22923 0.68 0.184693
Target:  5'- gGGCGaaGCCCuccgaGGCCGCgUCGaCGGCGcGGCGa -3'
miRNA:   3'- -UCGC--CGGG-----CCGGCG-AGC-GCUGC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 11040 0.68 0.189444
Target:  5'- gAGacaGGCCCGGa--CUUGUGACGGGCu -3'
miRNA:   3'- -UCg--CCGGGCCggcGAGCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 3958 0.67 0.206411
Target:  5'- cGCGGCCCGGggaUggagccagacggccgCGCUUGCGAgCGcGACAc -3'
miRNA:   3'- uCGCCGGGCC---G---------------GCGAGCGCU-GC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 34914 0.67 0.209538
Target:  5'- uGGCGGCCUacgaguggugcaGG-CGCaCGCGGCGGAg- -3'
miRNA:   3'- -UCGCCGGG------------CCgGCGaGCGCUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 32839 0.67 0.220259
Target:  5'- uGgGGCCCgagaGGCCGCgCGCcGCGGGa- -3'
miRNA:   3'- uCgCCGGG----CCGGCGaGCGcUGCCUgu -5'
11585 5' -65.1 NC_003085.1 + 3565 0.66 0.236631
Target:  5'- aGGCGGCCgGGCgGCaagCGCGccucgcugccgagGCGG-CGa -3'
miRNA:   3'- -UCGCCGGgCCGgCGa--GCGC-------------UGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 18119 0.7 0.139027
Target:  5'- uGGCGGCCuacCGGUaCGUcCGCG-CGGACAa -3'
miRNA:   3'- -UCGCCGG---GCCG-GCGaGCGCuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 45103 0.7 0.131924
Target:  5'- cGUGGUCCaGGUCGCgCGCGGCGuaGGCAu -3'
miRNA:   3'- uCGCCGGG-CCGGCGaGCGCUGC--CUGU- -5'
11585 5' -65.1 NC_003085.1 + 19994 0.7 0.121895
Target:  5'- -aCGGCCCuGCCGCcgUCGuCGugGGGCc -3'
miRNA:   3'- ucGCCGGGcCGGCG--AGC-GCugCCUGu -5'
11585 5' -65.1 NC_003085.1 + 25237 0.73 0.075231
Target:  5'- cGGCGccGCCCuGGUgCGCUcCGCGGCGGGCGu -3'
miRNA:   3'- -UCGC--CGGG-CCG-GCGA-GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 22791 0.73 0.077299
Target:  5'- cAGCGGCaaCGGCCGCUCccgcccaggagGCGACGGcCc -3'
miRNA:   3'- -UCGCCGg-GCCGGCGAG-----------CGCUGCCuGu -5'
11585 5' -65.1 NC_003085.1 + 10178 0.71 0.101191
Target:  5'- gGGCGGaCCCGGCUGCaaugCGCGACcuGCu -3'
miRNA:   3'- -UCGCC-GGGCCGGCGa---GCGCUGccUGu -5'
11585 5' -65.1 NC_003085.1 + 19689 0.71 0.103932
Target:  5'- uGGCGGCCCuGGagGCgCGCGGCGG-CAu -3'
miRNA:   3'- -UCGCCGGG-CCggCGaGCGCUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 37229 0.71 0.109625
Target:  5'- uGGCGGCCCaGCCGC-CGCGcucaagGCaGGCGu -3'
miRNA:   3'- -UCGCCGGGcCGGCGaGCGC------UGcCUGU- -5'
11585 5' -65.1 NC_003085.1 + 6756 0.71 0.109625
Target:  5'- -cCGGCCU-GCCGCgcCGUGGCGGACGg -3'
miRNA:   3'- ucGCCGGGcCGGCGa-GCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 23216 0.71 0.112579
Target:  5'- cAGUGGCCgGGCUGCUC-CaGACGGcCGc -3'
miRNA:   3'- -UCGCCGGgCCGGCGAGcG-CUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 41047 0.71 0.112579
Target:  5'- gGGCGGCUUggcgGGCUGCUaCGCGACuggGGGCu -3'
miRNA:   3'- -UCGCCGGG----CCGGCGA-GCGCUG---CCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.