miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11596 3' -56.7 NC_003085.1 + 48746 0.66 0.598961
Target:  5'- aCUgAGGcGCGGGUGgaccugCuCAGGCCGCGCc -3'
miRNA:   3'- -GAgUUC-CGUCCGCa-----GcGUCUGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 36143 0.66 0.598961
Target:  5'- -aCAuGGCGGGCucgcugaugaugGUCGCcGACCGCuCg -3'
miRNA:   3'- gaGUuCCGUCCG------------CAGCGuCUGGUGuG- -5'
11596 3' -56.7 NC_003085.1 + 37901 0.66 0.576933
Target:  5'- ---cGGGCAGGaCGgugcguuggCGCAGGCCccgGCGCu -3'
miRNA:   3'- gaguUCCGUCC-GCa--------GCGUCUGG---UGUG- -5'
11596 3' -56.7 NC_003085.1 + 38757 0.66 0.565983
Target:  5'- gUC-AGcCAGuGCcUCGCGGGCCGCGCg -3'
miRNA:   3'- gAGuUCcGUC-CGcAGCGUCUGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 47372 0.66 0.565983
Target:  5'- gUCGAGGaugAGuGCGUCGUAGccuUCGCGCu -3'
miRNA:   3'- gAGUUCCg--UC-CGCAGCGUCu--GGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 9683 0.66 0.555089
Target:  5'- gUCGAgcaccGGCuGGCGUCccuGCAGACUggaGCGCc -3'
miRNA:   3'- gAGUU-----CCGuCCGCAG---CGUCUGG---UGUG- -5'
11596 3' -56.7 NC_003085.1 + 41259 0.66 0.555089
Target:  5'- -gCGcGGCAGGCuggacUgGCGGGCCAUGCa -3'
miRNA:   3'- gaGUuCCGUCCGc----AgCGUCUGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 7326 0.67 0.533493
Target:  5'- aUCGcGG-AGGCGgcugaggaCGCGGGCUACACg -3'
miRNA:   3'- gAGUuCCgUCCGCa-------GCGUCUGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 46212 0.67 0.522807
Target:  5'- gCUCAuGGCGGGCGagugUGUGGGCCGg-- -3'
miRNA:   3'- -GAGUuCCGUCCGCa---GCGUCUGGUgug -5'
11596 3' -56.7 NC_003085.1 + 36770 0.67 0.512204
Target:  5'- -cCAGcGGCGuGGCGUCauccacccggagGCAGGCgCACACu -3'
miRNA:   3'- gaGUU-CCGU-CCGCAG------------CGUCUG-GUGUG- -5'
11596 3' -56.7 NC_003085.1 + 39593 0.67 0.512204
Target:  5'- -gCAAGcuGgAGcGCGUCGCGGAgCGCACc -3'
miRNA:   3'- gaGUUC--CgUC-CGCAGCGUCUgGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 7464 0.67 0.501691
Target:  5'- ----cGGUGGGCGUCGCGccUCACGCu -3'
miRNA:   3'- gaguuCCGUCCGCAGCGUcuGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 23642 0.67 0.501691
Target:  5'- uUCA--GCAGcGCGa-GCAGGCCGCGCa -3'
miRNA:   3'- gAGUucCGUC-CGCagCGUCUGGUGUG- -5'
11596 3' -56.7 NC_003085.1 + 26082 0.67 0.501691
Target:  5'- -gCAAGGCAcGGUGaCGCAuGGCCugggACACg -3'
miRNA:   3'- gaGUUCCGU-CCGCaGCGU-CUGG----UGUG- -5'
11596 3' -56.7 NC_003085.1 + 32472 0.67 0.501691
Target:  5'- uCUCGucGCcgucGGCGUCGCGGGCCcggaGCg -3'
miRNA:   3'- -GAGUucCGu---CCGCAGCGUCUGGug--UG- -5'
11596 3' -56.7 NC_003085.1 + 14368 0.67 0.491275
Target:  5'- aCUCAacGGGguGaCGUCGCAGAUgGCcCg -3'
miRNA:   3'- -GAGU--UCCguCcGCAGCGUCUGgUGuG- -5'
11596 3' -56.7 NC_003085.1 + 649 0.68 0.477884
Target:  5'- gUCGAGGCGcucgagcaccgcccGGaCGUCGCcGGCCACc- -3'
miRNA:   3'- gAGUUCCGU--------------CC-GCAGCGuCUGGUGug -5'
11596 3' -56.7 NC_003085.1 + 22620 0.68 0.47075
Target:  5'- aUCGAGGguGGCGgggGCAcacGCCugGCg -3'
miRNA:   3'- gAGUUCCguCCGCag-CGUc--UGGugUG- -5'
11596 3' -56.7 NC_003085.1 + 31131 0.68 0.467708
Target:  5'- -gUAAGGCAGcGCGUUGCGGcugcccuucggacgGCCAgCGCc -3'
miRNA:   3'- gaGUUCCGUC-CGCAGCGUC--------------UGGU-GUG- -5'
11596 3' -56.7 NC_003085.1 + 10129 0.68 0.460651
Target:  5'- cCUCAc-GCAGGUaUC-CAGGCCGCGCa -3'
miRNA:   3'- -GAGUucCGUCCGcAGcGUCUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.