miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 3' -55.3 NC_003085.1 + 21157 0.68 0.545097
Target:  5'- gGUgGACUGgUACGugGaGGGCUaCAGCg -3'
miRNA:   3'- -CAgCUGACgAUGCugC-CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 22944 0.66 0.687689
Target:  5'- cGUCGACgGCgcgGCGAagcCGGAcgagccGgCCCAGUc -3'
miRNA:   3'- -CAGCUGaCGa--UGCU---GCCU------UgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 23356 0.67 0.599587
Target:  5'- -cCGGCcGCcgaGGCGcAGCCCCAGCa -3'
miRNA:   3'- caGCUGaCGaugCUGCcUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 23455 0.71 0.394713
Target:  5'- --gGAC-GC-AUGACGGAGgCCCAGCg -3'
miRNA:   3'- cagCUGaCGaUGCUGCCUUgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 25774 0.69 0.49956
Target:  5'- --aGGCUGCUGCG-CGGGcccgcugcguggacGCCUgGGCg -3'
miRNA:   3'- cagCUGACGAUGCuGCCU--------------UGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 26097 0.67 0.599587
Target:  5'- gGUCGAagUGCUGgGGCuGcGCCUCGGCg -3'
miRNA:   3'- -CAGCUg-ACGAUgCUGcCuUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 26536 0.69 0.51211
Target:  5'- cGUCGAC-GCgGCcuCGGAgggcuucGCCCCGGCa -3'
miRNA:   3'- -CAGCUGaCGaUGcuGCCU-------UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 27342 0.73 0.295428
Target:  5'- -cCGGCUGCUGCGGCGccGGGCUCUgcugGGCg -3'
miRNA:   3'- caGCUGACGAUGCUGC--CUUGGGG----UCG- -5'
11597 3' -55.3 NC_003085.1 + 27488 0.71 0.413231
Target:  5'- cGUCGGCcUGUggaacuggacgUACGACGGcGGCgCCGGCa -3'
miRNA:   3'- -CAGCUG-ACG-----------AUGCUGCC-UUGgGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 31656 0.7 0.441988
Target:  5'- -cCGACUGCU-CGGCGGcagauuggucgGACUCgGGCg -3'
miRNA:   3'- caGCUGACGAuGCUGCC-----------UUGGGgUCG- -5'
11597 3' -55.3 NC_003085.1 + 31802 0.68 0.555889
Target:  5'- -cCGGCcGCUcGCGACGGAcacACCCgAGg -3'
miRNA:   3'- caGCUGaCGA-UGCUGCCU---UGGGgUCg -5'
11597 3' -55.3 NC_003085.1 + 32259 0.67 0.607296
Target:  5'- -gCGGC-GCUgaccaacucuccaaGCGcGCGGAACuCCCGGCa -3'
miRNA:   3'- caGCUGaCGA--------------UGC-UGCCUUG-GGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 32821 0.66 0.665771
Target:  5'- -gCGGCUGUcGCGACugauuGGGGCCCgAGa -3'
miRNA:   3'- caGCUGACGaUGCUG-----CCUUGGGgUCg -5'
11597 3' -55.3 NC_003085.1 + 34420 0.66 0.687689
Target:  5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3'
miRNA:   3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 37139 0.68 0.566741
Target:  5'- --gGGCacgGCgACGGCGGGcACCCUGGCg -3'
miRNA:   3'- cagCUGa--CGaUGCUGCCU-UGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 37718 1.13 0.000518
Target:  5'- cGUCGACUGCUACGACGGAACCCCAGCg -3'
miRNA:   3'- -CAGCUGACGAUGCUGCCUUGGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 38672 0.72 0.359327
Target:  5'- cUCGcACcGCUGCG-CGGAAgagguggcaugcCCCCAGCg -3'
miRNA:   3'- cAGC-UGaCGAUGCuGCCUU------------GGGGUCG- -5'
11597 3' -55.3 NC_003085.1 + 39227 0.71 0.421738
Target:  5'- cUCGGCcagGCUACGGCGuacaacgcacucuGGGCCgCAGCa -3'
miRNA:   3'- cAGCUGa--CGAUGCUGC-------------CUUGGgGUCG- -5'
11597 3' -55.3 NC_003085.1 + 40650 0.74 0.273853
Target:  5'- -cUGACgcugGCUGCGccgcgcaaccucGCGGAGCCgCCGGCg -3'
miRNA:   3'- caGCUGa---CGAUGC------------UGCCUUGG-GGUCG- -5'
11597 3' -55.3 NC_003085.1 + 40770 0.74 0.273853
Target:  5'- cUCGugUgGCUGacguUGGCGGAcggcACCCCGGCg -3'
miRNA:   3'- cAGCugA-CGAU----GCUGCCU----UGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.