miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11599 3' -52.7 NC_003085.1 + 40250 0.66 0.804114
Target:  5'- -cGCGGCUUcccgCGGCGAaCACAggGCGCa -3'
miRNA:   3'- aaCGUUGAGa---GCUGCUcGUGU--UGCGa -5'
11599 3' -52.7 NC_003085.1 + 45589 0.66 0.794048
Target:  5'- -cGCGACagaCGGCGGGCGCGccgucgACGCg -3'
miRNA:   3'- aaCGUUGagaGCUGCUCGUGU------UGCGa -5'
11599 3' -52.7 NC_003085.1 + 47722 0.66 0.794048
Target:  5'- cUGCGcCUgcUGACGGGCGCGguGCGCg -3'
miRNA:   3'- aACGUuGAgaGCUGCUCGUGU--UGCGa -5'
11599 3' -52.7 NC_003085.1 + 13641 0.66 0.794048
Target:  5'- -cGCAgGCgCUCGGCGAGCAgGugGa- -3'
miRNA:   3'- aaCGU-UGaGAGCUGCUCGUgUugCga -5'
11599 3' -52.7 NC_003085.1 + 19874 0.66 0.783799
Target:  5'- cUGCugGACggCUgGGCGAGCGCGAaggGCUa -3'
miRNA:   3'- aACG--UUGa-GAgCUGCUCGUGUUg--CGA- -5'
11599 3' -52.7 NC_003085.1 + 27831 0.66 0.773377
Target:  5'- aUGCAACUCcacccaGAGgACAACGCa -3'
miRNA:   3'- aACGUUGAGagcug-CUCgUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 39028 0.66 0.773377
Target:  5'- -gGCGACggcaugCgUgGGCGAGCGCuGCGCg -3'
miRNA:   3'- aaCGUUGa-----G-AgCUGCUCGUGuUGCGa -5'
11599 3' -52.7 NC_003085.1 + 8918 0.66 0.772327
Target:  5'- cUUGC-GC-CUCGACGccuccgaAGUGCAGCGCg -3'
miRNA:   3'- -AACGuUGaGAGCUGC-------UCGUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 39644 0.66 0.762798
Target:  5'- -cGCAACUUcgCGACGAcaccgaGCGGCGCg -3'
miRNA:   3'- aaCGUUGAGa-GCUGCUcg----UGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 10672 0.66 0.762798
Target:  5'- -aGCGACagCgcagCGACGAGgGCgAGCGCa -3'
miRNA:   3'- aaCGUUGa-Ga---GCUGCUCgUG-UUGCGa -5'
11599 3' -52.7 NC_003085.1 + 25250 0.66 0.761731
Target:  5'- gUGC-GCUCcgCGGCGGGCGucgucguCGGCGCg -3'
miRNA:   3'- aACGuUGAGa-GCUGCUCGU-------GUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 45200 0.66 0.752071
Target:  5'- cUGCGACUaCUUGAgGccaAGCGCGcgaaGCGCUg -3'
miRNA:   3'- aACGUUGA-GAGCUgC---UCGUGU----UGCGA- -5'
11599 3' -52.7 NC_003085.1 + 9405 0.66 0.750991
Target:  5'- -cGCGGCUaaaGGCGAGCaucuuucccuaccACGACGCg -3'
miRNA:   3'- aaCGUUGAgagCUGCUCG-------------UGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 48931 0.67 0.741212
Target:  5'- -cGCcaaUCUCcGCGAGgGCAGCGCg -3'
miRNA:   3'- aaCGuugAGAGcUGCUCgUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 11739 0.67 0.707968
Target:  5'- gUGguGCUgUCGAgGGGCAUGacACGCg -3'
miRNA:   3'- aACguUGAgAGCUgCUCGUGU--UGCGa -5'
11599 3' -52.7 NC_003085.1 + 48511 0.67 0.707968
Target:  5'- cUGCGACcuccuUCUCGGCG-GCGagGGCGCg -3'
miRNA:   3'- aACGUUG-----AGAGCUGCuCGUg-UUGCGa -5'
11599 3' -52.7 NC_003085.1 + 45367 0.67 0.696707
Target:  5'- --cCAACUCcagCGGCGAGUGCgGGCGCUc -3'
miRNA:   3'- aacGUUGAGa--GCUGCUCGUG-UUGCGA- -5'
11599 3' -52.7 NC_003085.1 + 15132 0.67 0.696707
Target:  5'- -cGCcGCguggugCGACGAGCACGagACGCa -3'
miRNA:   3'- aaCGuUGaga---GCUGCUCGUGU--UGCGa -5'
11599 3' -52.7 NC_003085.1 + 29308 0.68 0.685378
Target:  5'- cUGCAACuUCUCGuuguacugguaGCGGuagcuGCGCAGCGCc -3'
miRNA:   3'- aACGUUG-AGAGC-----------UGCU-----CGUGUUGCGa -5'
11599 3' -52.7 NC_003085.1 + 1487 0.68 0.685378
Target:  5'- -cGCGACUugCUCGACGcGGCccgucCGGCGCUc -3'
miRNA:   3'- aaCGUUGA--GAGCUGC-UCGu----GUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.