miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11599 5' -60.4 NC_003085.1 + 32690 0.66 0.45649
Target:  5'- cCACUGCUGgcGCgUCGUCuGGuaGCGCUCg -3'
miRNA:   3'- cGUGGCGGCa-CG-AGCAGcCC--UGCGAG- -5'
11599 5' -60.4 NC_003085.1 + 25238 0.66 0.431901
Target:  5'- gGCGCCGCCcugGUGCgcuccgcggcgggcgUCGUCGucGGCGCg- -3'
miRNA:   3'- -CGUGGCGG---CACG---------------AGCAGCc-CUGCGag -5'
11599 5' -60.4 NC_003085.1 + 26876 0.66 0.418985
Target:  5'- cGCACCuGCCGgcGC-CGgUGGGugGaCUCa -3'
miRNA:   3'- -CGUGG-CGGCa-CGaGCaGCCCugC-GAG- -5'
11599 5' -60.4 NC_003085.1 + 25776 0.66 0.418985
Target:  5'- gGCAaguCCGaCGUGCagGUgGGGACGC-Cg -3'
miRNA:   3'- -CGU---GGCgGCACGagCAgCCCUGCGaG- -5'
11599 5' -60.4 NC_003085.1 + 28950 0.67 0.400946
Target:  5'- uGCGCggaGUCGcGCUCGUCGcGGuacCGCUUg -3'
miRNA:   3'- -CGUGg--CGGCaCGAGCAGC-CCu--GCGAG- -5'
11599 5' -60.4 NC_003085.1 + 9207 0.67 0.400946
Target:  5'- uGCGCC-CUGUGUUCGccgCGGGAagcCGCg- -3'
miRNA:   3'- -CGUGGcGGCACGAGCa--GCCCU---GCGag -5'
11599 5' -60.4 NC_003085.1 + 20001 0.67 0.383411
Target:  5'- -uGCCGCCGUcgUCGUgGGGcCGCa- -3'
miRNA:   3'- cgUGGCGGCAcgAGCAgCCCuGCGag -5'
11599 5' -60.4 NC_003085.1 + 24257 0.67 0.374836
Target:  5'- gGUACCaGCCGUacuGCUCGgCGacguuGGCGCUCa -3'
miRNA:   3'- -CGUGG-CGGCA---CGAGCaGCc----CUGCGAG- -5'
11599 5' -60.4 NC_003085.1 + 8637 0.67 0.374836
Target:  5'- -gGCCGCCGUcagguacagGC-CGgcCGGGACGCg- -3'
miRNA:   3'- cgUGGCGGCA---------CGaGCa-GCCCUGCGag -5'
11599 5' -60.4 NC_003085.1 + 17815 0.68 0.3499
Target:  5'- -uGCCGCCGaGCa-GUCGGGcuGgGCUCa -3'
miRNA:   3'- cgUGGCGGCaCGagCAGCCC--UgCGAG- -5'
11599 5' -60.4 NC_003085.1 + 41939 0.68 0.3499
Target:  5'- gGC-CCGCgCGUcCUCGUCGGuGAuguccugcaacCGCUCg -3'
miRNA:   3'- -CGuGGCG-GCAcGAGCAGCC-CU-----------GCGAG- -5'
11599 5' -60.4 NC_003085.1 + 23349 0.68 0.341855
Target:  5'- aGCGCCGCCG-GC-CGcCGaGGCGCa- -3'
miRNA:   3'- -CGUGGCGGCaCGaGCaGCcCUGCGag -5'
11599 5' -60.4 NC_003085.1 + 28364 0.68 0.341855
Target:  5'- gGCACCGCCGUGgcgcggaccguaCUUGUCGGaaucGACaucCUCu -3'
miRNA:   3'- -CGUGGCGGCAC------------GAGCAGCC----CUGc--GAG- -5'
11599 5' -60.4 NC_003085.1 + 42720 0.68 0.333944
Target:  5'- gGCACCucaGgCGUGggCGUCGGGGCGaugCg -3'
miRNA:   3'- -CGUGG---CgGCACgaGCAGCCCUGCga-G- -5'
11599 5' -60.4 NC_003085.1 + 1927 0.68 0.333944
Target:  5'- cGCAUCGCuCGcggGCUCGUCGgucccGGugGC-Cg -3'
miRNA:   3'- -CGUGGCG-GCa--CGAGCAGC-----CCugCGaG- -5'
11599 5' -60.4 NC_003085.1 + 2454 0.69 0.299294
Target:  5'- cGCGCCGUCGU-CUCugagccuggggagaaGUUGGGcgaaACGCUCa -3'
miRNA:   3'- -CGUGGCGGCAcGAG---------------CAGCCC----UGCGAG- -5'
11599 5' -60.4 NC_003085.1 + 3295 0.69 0.28235
Target:  5'- cCGCCuaCGUGUcauUCGaacUCGGGACGCUg -3'
miRNA:   3'- cGUGGcgGCACG---AGC---AGCCCUGCGAg -5'
11599 5' -60.4 NC_003085.1 + 37699 0.69 0.268817
Target:  5'- gGCGCCGCCGUaC-CGUCGuaGACGCg- -3'
miRNA:   3'- -CGUGGCGGCAcGaGCAGCc-CUGCGag -5'
11599 5' -60.4 NC_003085.1 + 40750 0.7 0.255812
Target:  5'- aGCACUGCCacGUGUUCGUCGaGGcccacccgaaguGCGCg- -3'
miRNA:   3'- -CGUGGCGG--CACGAGCAGC-CC------------UGCGag -5'
11599 5' -60.4 NC_003085.1 + 38138 0.7 0.243327
Target:  5'- uCGCCGCCcUGCUggCGUUGGugguGGCGCUCc -3'
miRNA:   3'- cGUGGCGGcACGA--GCAGCC----CUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.