Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11599 | 5' | -60.4 | NC_003085.1 | + | 38138 | 0.7 | 0.243327 |
Target: 5'- uCGCCGCCcUGCUggCGUUGGugguGGCGCUCc -3' miRNA: 3'- cGUGGCGGcACGA--GCAGCC----CUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 38614 | 1.11 | 0.000217 |
Target: 5'- uGCACCGCCGUGCUCGUCGGGACGCUCa -3' miRNA: 3'- -CGUGGCGGCACGAGCAGCCCUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 39480 | 0.72 | 0.17412 |
Target: 5'- -uGCCGaCGUGCgCGUCGaGGCGCUCg -3' miRNA: 3'- cgUGGCgGCACGaGCAGCcCUGCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 40630 | 0.71 | 0.214329 |
Target: 5'- cCGCUGCCGUcCUCGUCGcccuGACGCUg -3' miRNA: 3'- cGUGGCGGCAcGAGCAGCc---CUGCGAg -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 40750 | 0.7 | 0.255812 |
Target: 5'- aGCACUGCCacGUGUUCGUCGaGGcccacccgaaguGCGCg- -3' miRNA: 3'- -CGUGGCGG--CACGAGCAGC-CC------------UGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 41939 | 0.68 | 0.3499 |
Target: 5'- gGC-CCGCgCGUcCUCGUCGGuGAuguccugcaacCGCUCg -3' miRNA: 3'- -CGuGGCG-GCAcGAGCAGCC-CU-----------GCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 42720 | 0.68 | 0.333944 |
Target: 5'- gGCACCucaGgCGUGggCGUCGGGGCGaugCg -3' miRNA: 3'- -CGUGG---CgGCACgaGCAGCCCUGCga-G- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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