Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11599 | 5' | -60.4 | NC_003085.1 | + | 20001 | 0.67 | 0.383411 |
Target: 5'- -uGCCGCCGUcgUCGUgGGGcCGCa- -3' miRNA: 3'- cgUGGCGGCAcgAGCAgCCCuGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 9207 | 0.67 | 0.400946 |
Target: 5'- uGCGCC-CUGUGUUCGccgCGGGAagcCGCg- -3' miRNA: 3'- -CGUGGcGGCACGAGCa--GCCCU---GCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 28950 | 0.67 | 0.400946 |
Target: 5'- uGCGCggaGUCGcGCUCGUCGcGGuacCGCUUg -3' miRNA: 3'- -CGUGg--CGGCaCGAGCAGC-CCu--GCGAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 25776 | 0.66 | 0.418985 |
Target: 5'- gGCAaguCCGaCGUGCagGUgGGGACGC-Cg -3' miRNA: 3'- -CGU---GGCgGCACGagCAgCCCUGCGaG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 26876 | 0.66 | 0.418985 |
Target: 5'- cGCACCuGCCGgcGC-CGgUGGGugGaCUCa -3' miRNA: 3'- -CGUGG-CGGCa-CGaGCaGCCCugC-GAG- -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 25238 | 0.66 | 0.431901 |
Target: 5'- gGCGCCGCCcugGUGCgcuccgcggcgggcgUCGUCGucGGCGCg- -3' miRNA: 3'- -CGUGGCGG---CACG---------------AGCAGCc-CUGCGag -5' |
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11599 | 5' | -60.4 | NC_003085.1 | + | 32690 | 0.66 | 0.45649 |
Target: 5'- cCACUGCUGgcGCgUCGUCuGGuaGCGCUCg -3' miRNA: 3'- cGUGGCGGCa-CG-AGCAGcCC--UGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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