miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 1049 0.7 0.547865
Target:  5'- gGCGCcgAACUGcCcGCGUGGCUcCGCUg -3'
miRNA:   3'- aCGUG--UUGACuGuUGCGCCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 47027 0.7 0.547865
Target:  5'- gGCGCGuuGCaggguagGGCAGCGCGuCUUCGUCa -3'
miRNA:   3'- aCGUGU--UGa------CUGUUGCGCcGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 21796 0.7 0.566703
Target:  5'- aGCACGucgccgccguagucGgUGGCGAUGCGGCguccCGCUg -3'
miRNA:   3'- aCGUGU--------------UgACUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 8459 0.7 0.570046
Target:  5'- -cCACGGCgaUGACGACGCcGCUggGCCa -3'
miRNA:   3'- acGUGUUG--ACUGUUGCGcCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 48285 0.7 0.570046
Target:  5'- cGCGCAGa--GCAGCGCgugGGCUcCGCCc -3'
miRNA:   3'- aCGUGUUgacUGUUGCG---CCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 47902 0.7 0.570046
Target:  5'- cGCACuGCaGGCGACGCgcacGGCcUCGCg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG----CCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 7815 0.7 0.58122
Target:  5'- gGCACAGCaccagGugAGCgGCGGCcaaGCCu -3'
miRNA:   3'- aCGUGUUGa----CugUUG-CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 40991 0.7 0.58122
Target:  5'- gGCAagGGCUGGCccaGCGGCgucgucaUCGCCg -3'
miRNA:   3'- aCGUg-UUGACUGuugCGCCGa------AGCGG- -5'
11600 3' -53 NC_003085.1 + 24474 0.69 0.603694
Target:  5'- cGCAgGuggagGACAugGCGGCggUgGCCa -3'
miRNA:   3'- aCGUgUuga--CUGUugCGCCGa-AgCGG- -5'
11600 3' -53 NC_003085.1 + 22939 0.69 0.603694
Target:  5'- gGcCGCGuc-GACGGCGCGGCgaaGCCg -3'
miRNA:   3'- aC-GUGUugaCUGUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 27163 0.69 0.614974
Target:  5'- gGgACcaGACgGGCGACGCuGGCUUCGgCg -3'
miRNA:   3'- aCgUG--UUGaCUGUUGCG-CCGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 10718 0.69 0.614974
Target:  5'- gGCACuGGCUGACGGCaaGCGGa--CGCUg -3'
miRNA:   3'- aCGUG-UUGACUGUUG--CGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 12599 0.69 0.614974
Target:  5'- gGUcCGACUGACGcGCGUGGCgccccgggCGCUg -3'
miRNA:   3'- aCGuGUUGACUGU-UGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 409 0.69 0.614974
Target:  5'- --aGCAACUGACgGACGUGGagUUgGCCg -3'
miRNA:   3'- acgUGUUGACUG-UUGCGCCg-AAgCGG- -5'
11600 3' -53 NC_003085.1 + 26500 0.69 0.614974
Target:  5'- gGCA-GACUGGgcCGGCucgucCGGCUUCGCCg -3'
miRNA:   3'- aCGUgUUGACU--GUUGc----GCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 25780 0.69 0.62627
Target:  5'- cUGCGCGggcccgcuGCgugGACGccuGgGCGGCgUUCGCCu -3'
miRNA:   3'- -ACGUGU--------UGa--CUGU---UgCGCCG-AAGCGG- -5'
11600 3' -53 NC_003085.1 + 25373 0.69 0.62627
Target:  5'- gGCAC-GCcGACGGCG-GGCUUCaCCg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCgCCGAAGcGG- -5'
11600 3' -53 NC_003085.1 + 14348 0.69 0.637572
Target:  5'- gGCACGGCcauuagGACAGaagccaGCGGCUggcugCGCg -3'
miRNA:   3'- aCGUGUUGa-----CUGUUg-----CGCCGAa----GCGg -5'
11600 3' -53 NC_003085.1 + 10985 0.69 0.637572
Target:  5'- gGCGaGACguUGGgGACGCGGCaUCGCg -3'
miRNA:   3'- aCGUgUUG--ACUgUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 30010 0.69 0.647739
Target:  5'- cUGgGCGGCcuUGGCGAcgucgucCGCGGCUUCcaggGCCa -3'
miRNA:   3'- -ACgUGUUG--ACUGUU-------GCGCCGAAG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.