Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 5' | -57.6 | NC_003085.1 | + | 40492 | 0.67 | 0.474792 |
Target: 5'- cUGGCGG-GCGUCGUCgAGCcggaGCcGCUGa -3' miRNA: 3'- cACCGUCuUGCAGCAG-UCG----CGcCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 38826 | 0.67 | 0.480874 |
Target: 5'- uGUGaGCAGGgcgcacugccGCGUCGUCccacugcgacggcGCGCGGCg- -3' miRNA: 3'- -CAC-CGUCU----------UGCAGCAGu------------CGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 39876 | 0.66 | 0.526553 |
Target: 5'- aUGGCGGAgagACGcCGgugcUCGGCGgCGGCa- -3' miRNA: 3'- cACCGUCU---UGCaGC----AGUCGC-GCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 18513 | 0.66 | 0.537169 |
Target: 5'- cUGGCAGGAC-UCGggucUGCGGCUGc -3' miRNA: 3'- cACCGUCUUGcAGCagucGCGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 20602 | 0.66 | 0.546785 |
Target: 5'- -cGGCAGcGCcgcggaaGUCGggCGGCGCGGgUGc -3' miRNA: 3'- caCCGUCuUG-------CAGCa-GUCGCGCCgAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 20654 | 0.66 | 0.547856 |
Target: 5'- cGUGGCuc-GCGUCGcgUCGGaguugcuggaGCGGCUGc -3' miRNA: 3'- -CACCGucuUGCAGC--AGUCg---------CGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 37407 | 0.66 | 0.547856 |
Target: 5'- -gGGCAGGuagugaccgAUG-CGcCAGUGCGGCUa -3' miRNA: 3'- caCCGUCU---------UGCaGCaGUCGCGCCGAc -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 42728 | 0.66 | 0.547856 |
Target: 5'- -aGGCGuGGGCGUCGgggCgaugcgGGCGCGGUg- -3' miRNA: 3'- caCCGU-CUUGCAGCa--G------UCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 28517 | 0.66 | 0.558611 |
Target: 5'- -aGGCGGugGACG-CGUCAGggcgaaucCGCGGCg- -3' miRNA: 3'- caCCGUC--UUGCaGCAGUC--------GCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 34316 | 0.66 | 0.56293 |
Target: 5'- -gGGCAGuaguGCGucUCGUgcucgucgcaccacgCGGCGCGGCg- -3' miRNA: 3'- caCCGUCu---UGC--AGCA---------------GUCGCGCCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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