Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 5' | -57.6 | NC_003085.1 | + | 38726 | 1.07 | 0.000648 |
Target: 5'- gGUGGCAGAACGUCGUCAGCGCGGCUGu -3' miRNA: 3'- -CACCGUCUUGCAGCAGUCGCGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 38826 | 0.67 | 0.480874 |
Target: 5'- uGUGaGCAGGgcgcacugccGCGUCGUCccacugcgacggcGCGCGGCg- -3' miRNA: 3'- -CAC-CGUCU----------UGCAGCAGu------------CGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 39876 | 0.66 | 0.526553 |
Target: 5'- aUGGCGGAgagACGcCGgugcUCGGCGgCGGCa- -3' miRNA: 3'- cACCGUCU---UGCaGC----AGUCGC-GCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 40492 | 0.67 | 0.474792 |
Target: 5'- cUGGCGG-GCGUCGUCgAGCcggaGCcGCUGa -3' miRNA: 3'- cACCGUCuUGCAGCAG-UCG----CGcCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 42728 | 0.66 | 0.547856 |
Target: 5'- -aGGCGuGGGCGUCGgggCgaugcgGGCGCGGUg- -3' miRNA: 3'- caCCGU-CUUGCAGCa--G------UCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 45402 | 0.74 | 0.186411 |
Target: 5'- -aGGCGGAGCGcCGUCagcgaaagcauggGGCGCGGUg- -3' miRNA: 3'- caCCGUCUUGCaGCAG-------------UCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 46117 | 0.77 | 0.110674 |
Target: 5'- -gGGCgucggGGAGCGUCGUCuGUGCGGCg- -3' miRNA: 3'- caCCG-----UCUUGCAGCAGuCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 46899 | 0.7 | 0.305824 |
Target: 5'- -gGGCuuguGAAgGUCGUCAcCGCGGCa- -3' miRNA: 3'- caCCGu---CUUgCAGCAGUcGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 47867 | 0.69 | 0.388678 |
Target: 5'- -aGGUcGAGCGagaCGUCAGCGCGuGCg- -3' miRNA: 3'- caCCGuCUUGCa--GCAGUCGCGC-CGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 48117 | 0.71 | 0.269756 |
Target: 5'- uUGGCGGcAACGUCGcCAGCaGUcugGGCUGc -3' miRNA: 3'- cACCGUC-UUGCAGCaGUCG-CG---CCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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