Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 5' | -57.6 | NC_003085.1 | + | 25260 | 0.71 | 0.276686 |
Target: 5'- -cGGCGGGcguCGUCGUCGGCGCGc--- -3' miRNA: 3'- caCCGUCUu--GCAGCAGUCGCGCcgac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 25180 | 0.69 | 0.385988 |
Target: 5'- gGUGGCGGuggcgaugagcgccAACGUCGccgagCAGUaCGGCUGg -3' miRNA: 3'- -CACCGUC--------------UUGCAGCa----GUCGcGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 22938 | 0.7 | 0.305824 |
Target: 5'- -aGGCc--GCGUCGaCGGCGCGGCg- -3' miRNA: 3'- caCCGucuUGCAGCaGUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 20654 | 0.66 | 0.547856 |
Target: 5'- cGUGGCuc-GCGUCGcgUCGGaguugcuggaGCGGCUGc -3' miRNA: 3'- -CACCGucuUGCAGC--AGUCg---------CGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 20602 | 0.66 | 0.546785 |
Target: 5'- -cGGCAGcGCcgcggaaGUCGggCGGCGCGGgUGc -3' miRNA: 3'- caCCGUCuUG-------CAGCa-GUCGCGCCgAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 18513 | 0.66 | 0.537169 |
Target: 5'- cUGGCAGGAC-UCGggucUGCGGCUGc -3' miRNA: 3'- cACCGUCUUGcAGCagucGCGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 13443 | 0.68 | 0.397734 |
Target: 5'- uUGGguGAcgugcucugguACGUCGcggucaucgCGGCGCGGCUc -3' miRNA: 3'- cACCguCU-----------UGCAGCa--------GUCGCGCCGAc -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 11567 | 0.69 | 0.370976 |
Target: 5'- -gGGCA--GCGcCGUCGGCGUGGUg- -3' miRNA: 3'- caCCGUcuUGCaGCAGUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 5999 | 0.69 | 0.370976 |
Target: 5'- aGUGGguGcguGACGUCaucgcucagCAGCGCGGCa- -3' miRNA: 3'- -CACCguC---UUGCAGca-------GUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 550 | 0.77 | 0.117073 |
Target: 5'- uUGGC-GAACGgcgCGaggCGGCGCGGCUGg -3' miRNA: 3'- cACCGuCUUGCa--GCa--GUCGCGCCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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