miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 3' -60.3 NC_003085.1 + 48619 0.72 0.159893
Target:  5'- cGGGCAGCGCgacgugagagacGCGCucgacgACCUGCgGCg -3'
miRNA:   3'- -CCCGUCGCGa-----------CGCGca----UGGACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 46727 0.72 0.16076
Target:  5'- uGGGCAGCGCcuucgcGCGCGcUGCCaGCcGCc -3'
miRNA:   3'- -CCCGUCGCGa-----CGCGC-AUGGaCGaCGa -5'
11602 3' -60.3 NC_003085.1 + 45153 0.67 0.32236
Target:  5'- aGGuGCAGCGCUgGCGC-UACgUGCUcCUc -3'
miRNA:   3'- -CC-CGUCGCGA-CGCGcAUGgACGAcGA- -5'
11602 3' -60.3 NC_003085.1 + 42608 0.68 0.292322
Target:  5'- cGGGUAGUGCUGCGCG-GCUUuC-GCg -3'
miRNA:   3'- -CCCGUCGCGACGCGCaUGGAcGaCGa -5'
11602 3' -60.3 NC_003085.1 + 42242 0.72 0.156467
Target:  5'- gGGGCAGCGCUGCGCcauCCacaUGCc -3'
miRNA:   3'- -CCCGUCGCGACGCGcauGGacgACGa -5'
11602 3' -60.3 NC_003085.1 + 40326 0.67 0.346363
Target:  5'- cGGCaAGgGCUgGCGCGUGCCUcaGUggGCg -3'
miRNA:   3'- cCCG-UCgCGA-CGCGCAUGGA--CGa-CGa -5'
11602 3' -60.3 NC_003085.1 + 39257 0.68 0.27058
Target:  5'- uGGGCcgcagcauGUGCUGCGCGccuCCUcuacggcGCUGCg -3'
miRNA:   3'- -CCCGu-------CGCGACGCGCau-GGA-------CGACGa -5'
11602 3' -60.3 NC_003085.1 + 39042 1.03 0.000678
Target:  5'- uGGGCgAGCGCUGCGCGUACCUGCUGCUg -3'
miRNA:   3'- -CCCG-UCGCGACGCGCAUGGACGACGA- -5'
11602 3' -60.3 NC_003085.1 + 37850 0.66 0.3972
Target:  5'- uGGUAGCGCUGCcuGCGcugGCCgGCcagacgucggaggUGCUg -3'
miRNA:   3'- cCCGUCGCGACG--CGCa--UGGaCG-------------ACGA- -5'
11602 3' -60.3 NC_003085.1 + 36452 0.68 0.271261
Target:  5'- aGGGCGGCGCcucaugGCGagguaGUGCCacugGCgGCUu -3'
miRNA:   3'- -CCCGUCGCGa-----CGCg----CAUGGa---CGaCGA- -5'
11602 3' -60.3 NC_003085.1 + 36371 0.68 0.292322
Target:  5'- --uCAGCGCgGCGUGccaguuCCUGCUGCa -3'
miRNA:   3'- cccGUCGCGaCGCGCau----GGACGACGa -5'
11602 3' -60.3 NC_003085.1 + 35939 0.67 0.330221
Target:  5'- gGGGUAGCGCuUGCGgagcuucucgaCGUucGCC-GCUGCc -3'
miRNA:   3'- -CCCGUCGCG-ACGC-----------GCA--UGGaCGACGa -5'
11602 3' -60.3 NC_003085.1 + 34269 0.66 0.371619
Target:  5'- cGGcGCGGCGCUG-GCGcACCgGCUcaGCc -3'
miRNA:   3'- -CC-CGUCGCGACgCGCaUGGaCGA--CGa -5'
11602 3' -60.3 NC_003085.1 + 30338 0.68 0.30706
Target:  5'- uGGCGGaCGCUGuCGCGgggcGCaCUGCgGCg -3'
miRNA:   3'- cCCGUC-GCGAC-GCGCa---UG-GACGaCGa -5'
11602 3' -60.3 NC_003085.1 + 29187 0.68 0.295225
Target:  5'- uGGCAGCGCcGCGaggacgcggagcgcaCGcGCCUGCUGa- -3'
miRNA:   3'- cCCGUCGCGaCGC---------------GCaUGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 28718 0.66 0.389141
Target:  5'- cGGGCAGCagccgguccuGgaGgGCGUacuccagcGCCUGCUGg- -3'
miRNA:   3'- -CCCGUCG----------CgaCgCGCA--------UGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 28107 0.74 0.103487
Target:  5'- uGGGCAGCGC-GCGCcagaagcagGUGCaguUGCUGCg -3'
miRNA:   3'- -CCCGUCGCGaCGCG---------CAUGg--ACGACGa -5'
11602 3' -60.3 NC_003085.1 + 27483 0.71 0.19388
Target:  5'- aGGG-AGCGCUGC-CGggcACCUGCUGa- -3'
miRNA:   3'- -CCCgUCGCGACGcGCa--UGGACGACga -5'
11602 3' -60.3 NC_003085.1 + 27358 0.66 0.363063
Target:  5'- cGGGCucUGCUGgGCG-GCCUGCuucUGCg -3'
miRNA:   3'- -CCCGucGCGACgCGCaUGGACG---ACGa -5'
11602 3' -60.3 NC_003085.1 + 26721 0.7 0.215382
Target:  5'- aGGGCGGUGacgGCGCGgcGCCggUGCUGUc -3'
miRNA:   3'- -CCCGUCGCga-CGCGCa-UGG--ACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.