miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 47890 0.67 0.611016
Target:  5'- cGuAC-GCCgcgCCGCAcugcAGGCGACGCg -3'
miRNA:   3'- aCuUGuCGGa--GGCGUa---UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 28792 0.67 0.611016
Target:  5'- uUGAGCAGCCgcUCCaGCAacuccgacGCGACGCg -3'
miRNA:   3'- -ACUUGUCGG--AGG-CGUauc-----CGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 13259 0.67 0.611016
Target:  5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3'
miRNA:   3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 3202 0.67 0.599727
Target:  5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3'
miRNA:   3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 39112 0.67 0.599727
Target:  5'- gGAGCGuccgcgguGCCUCC-CGggAGGCGACGUg -3'
miRNA:   3'- aCUUGU--------CGGAGGcGUa-UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 46200 0.67 0.5986
Target:  5'- -cAACGGCCUCCggucguguuguggGCAUAGGCGAaggGUUc -3'
miRNA:   3'- acUUGUCGGAGG-------------CGUAUCCGUUg--CGA- -5'
11602 5' -54.5 NC_003085.1 + 302 0.68 0.588467
Target:  5'- cGGGCGGCCUCCGaccucauGGaGAUGCUc -3'
miRNA:   3'- aCUUGUCGGAGGCguau---CCgUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 30507 0.68 0.577247
Target:  5'- -cGACAGCCagaUGCAggaacaggAGGCGGCGCg -3'
miRNA:   3'- acUUGUCGGag-GCGUa-------UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 19134 0.68 0.577247
Target:  5'- -cGACAGCgUCCGCcaGGGCc-CGCUg -3'
miRNA:   3'- acUUGUCGgAGGCGuaUCCGuuGCGA- -5'
11602 5' -54.5 NC_003085.1 + 5835 0.68 0.566074
Target:  5'- cGGAUGGCCUCCcgugcccgcucuGCAcucgggauGGCAGCGCc -3'
miRNA:   3'- aCUUGUCGGAGG------------CGUau------CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 21480 0.68 0.554958
Target:  5'- aGGGCGGCCUgCGC---GGCGugGUg -3'
miRNA:   3'- aCUUGUCGGAgGCGuauCCGUugCGa -5'
11602 5' -54.5 NC_003085.1 + 39030 0.68 0.554958
Target:  5'- -cGACGGCa--UGCGUGGGCgAGCGCUg -3'
miRNA:   3'- acUUGUCGgagGCGUAUCCG-UUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 20602 0.68 0.532928
Target:  5'- -cGGCAGCg-CCGCGgaagucGGGCGGCGCg -3'
miRNA:   3'- acUUGUCGgaGGCGUa-----UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 27367 0.69 0.515532
Target:  5'- cUGGGCGGCCugcuucugcgccucuUCCGCGgcGGCGAUGg- -3'
miRNA:   3'- -ACUUGUCGG---------------AGGCGUauCCGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 48933 0.69 0.511219
Target:  5'- ---cCAaUCUCCGCGaGGGCAGCGCg -3'
miRNA:   3'- acuuGUcGGAGGCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 43529 0.69 0.489885
Target:  5'- gGAACGGCg-CCGa--AGGCGGCGCg -3'
miRNA:   3'- aCUUGUCGgaGGCguaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 31158 0.69 0.489885
Target:  5'- cGGACGGCCagCGCcgGGGCGugcacCGCc -3'
miRNA:   3'- aCUUGUCGGagGCGuaUCCGUu----GCGa -5'
11602 5' -54.5 NC_003085.1 + 26202 0.69 0.479375
Target:  5'- cGAGCugcGCCUUgUGCGcGGGCGGCGCg -3'
miRNA:   3'- aCUUGu--CGGAG-GCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 23931 0.7 0.468977
Target:  5'- aUGGGCAGCCUCCGcCAUcuGCucaGCg -3'
miRNA:   3'- -ACUUGUCGGAGGC-GUAucCGuugCGa -5'
11602 5' -54.5 NC_003085.1 + 26068 0.7 0.458695
Target:  5'- cGAGCAGCUUucUCGCA-AGGCAcggugACGCa -3'
miRNA:   3'- aCUUGUCGGA--GGCGUaUCCGU-----UGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.