miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 22797 0.66 0.701121
Target:  5'- -cAACGGCCgcucCCGCccaggAGGCGACGg- -3'
miRNA:   3'- acUUGUCGGa---GGCGua---UCCGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 23652 0.66 0.678784
Target:  5'- cGAGCAGg--CCGCGcAGGCgAACGCc -3'
miRNA:   3'- aCUUGUCggaGGCGUaUCCG-UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 23764 0.67 0.611016
Target:  5'- gUGAgagGCAGCCUCgaagcgGCAUGGGCGAauuCGUc -3'
miRNA:   3'- -ACU---UGUCGGAGg-----CGUAUCCGUU---GCGa -5'
11602 5' -54.5 NC_003085.1 + 23931 0.7 0.468977
Target:  5'- aUGGGCAGCCUCCGcCAUcuGCucaGCg -3'
miRNA:   3'- -ACUUGUCGGAGGC-GUAucCGuugCGa -5'
11602 5' -54.5 NC_003085.1 + 24822 0.66 0.65626
Target:  5'- cGAgguucGCcuCCUCCGCcgAGGUgaAGCGCUg -3'
miRNA:   3'- aCU-----UGucGGAGGCGuaUCCG--UUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 26068 0.7 0.458695
Target:  5'- cGAGCAGCUUucUCGCA-AGGCAcggugACGCa -3'
miRNA:   3'- aCUUGUCGGA--GGCGUaUCCGU-----UGCGa -5'
11602 5' -54.5 NC_003085.1 + 26109 0.72 0.328991
Target:  5'- gGGGCugcGCCUCgGCGgccGGCGGCGCUu -3'
miRNA:   3'- aCUUGu--CGGAGgCGUau-CCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 26202 0.69 0.479375
Target:  5'- cGAGCugcGCCUUgUGCGcGGGCGGCGCg -3'
miRNA:   3'- aCUUGu--CGGAG-GCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 26565 0.66 0.667539
Target:  5'- -cGGCAGCCUCCGCc--GGaguCGCa -3'
miRNA:   3'- acUUGUCGGAGGCGuauCCguuGCGa -5'
11602 5' -54.5 NC_003085.1 + 26972 0.66 0.689982
Target:  5'- cGAGCucGGCCUgCGCAgccggcUGGGCuacCGCg -3'
miRNA:   3'- aCUUG--UCGGAgGCGU------AUCCGuu-GCGa -5'
11602 5' -54.5 NC_003085.1 + 27367 0.69 0.515532
Target:  5'- cUGGGCGGCCugcuucugcgccucuUCCGCGgcGGCGAUGg- -3'
miRNA:   3'- -ACUUGUCGG---------------AGGCGUauCCGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 28606 0.67 0.622324
Target:  5'- gUGGGCGGCa-CCGCAgcGGCGA-GCUc -3'
miRNA:   3'- -ACUUGUCGgaGGCGUauCCGUUgCGA- -5'
11602 5' -54.5 NC_003085.1 + 28792 0.67 0.611016
Target:  5'- uUGAGCAGCCgcUCCaGCAacuccgacGCGACGCg -3'
miRNA:   3'- -ACUUGUCGG--AGG-CGUauc-----CGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 30001 0.66 0.712189
Target:  5'- gGAGCGGCCcugggCgGCcuuGGCGACGUc -3'
miRNA:   3'- aCUUGUCGGa----GgCGuauCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 30507 0.68 0.577247
Target:  5'- -cGACAGCCagaUGCAggaacaggAGGCGGCGCg -3'
miRNA:   3'- acUUGUCGGag-GCGUa-------UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 31107 0.71 0.418824
Target:  5'- cGAcuccACGGCCUgcaCCGCcccguaAGGCAGCGCg -3'
miRNA:   3'- aCU----UGUCGGA---GGCGua----UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 31158 0.69 0.489885
Target:  5'- cGGACGGCCagCGCcgGGGCGugcacCGCc -3'
miRNA:   3'- aCUUGUCGGagGCGuaUCCGUu----GCGa -5'
11602 5' -54.5 NC_003085.1 + 35719 0.66 0.678784
Target:  5'- -cAACGGCCUCC-CGUuGGGCGGCuucGCg -3'
miRNA:   3'- acUUGUCGGAGGcGUA-UCCGUUG---CGa -5'
11602 5' -54.5 NC_003085.1 + 37674 0.66 0.65626
Target:  5'- gGGGCAGCCgacaCGCccggAGcGCGGCGCc -3'
miRNA:   3'- aCUUGUCGGag--GCGua--UC-CGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 39030 0.68 0.554958
Target:  5'- -cGACGGCa--UGCGUGGGCgAGCGCUg -3'
miRNA:   3'- acUUGUCGgagGCGUAUCCG-UUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.