miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 302 0.68 0.588467
Target:  5'- cGGGCGGCCUCCGaccucauGGaGAUGCUc -3'
miRNA:   3'- aCUUGUCGGAGGCguau---CCgUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 708 0.67 0.633641
Target:  5'- gGGGCAa-CUCCGCGUGGcGCcuGACGCg -3'
miRNA:   3'- aCUUGUcgGAGGCGUAUC-CG--UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 1049 0.66 0.667539
Target:  5'- gGAGgaAGCCagcgCCGCcgAGGCAgacaaugcgGCGCUg -3'
miRNA:   3'- aCUUg-UCGGa---GGCGuaUCCGU---------UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 1351 0.73 0.280122
Target:  5'- cGGACGGCUUCCGCcUGGGCucuacaucccucccGACGUc -3'
miRNA:   3'- aCUUGUCGGAGGCGuAUCCG--------------UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 3202 0.67 0.599727
Target:  5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3'
miRNA:   3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 5241 0.72 0.337304
Target:  5'- -aAGCGGCCUCCaacGCGaaUGGGUGGCGCg -3'
miRNA:   3'- acUUGUCGGAGG---CGU--AUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 5835 0.68 0.566074
Target:  5'- cGGAUGGCCUCCcgugcccgcucuGCAcucgggauGGCAGCGCc -3'
miRNA:   3'- aCUUGUCGGAGG------------CGUau------CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 11609 0.71 0.38113
Target:  5'- cUGGcCGGCCagCGC--AGGCAGCGCUa -3'
miRNA:   3'- -ACUuGUCGGagGCGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 13259 0.67 0.611016
Target:  5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3'
miRNA:   3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 13710 0.66 0.65626
Target:  5'- cGAAgAGCCuguuccuguUCCGUcgAGGUcACGCg -3'
miRNA:   3'- aCUUgUCGG---------AGGCGuaUCCGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 15123 0.71 0.399693
Target:  5'- gGAGC-GCCgcgCCGCGUGGuGCGACGa- -3'
miRNA:   3'- aCUUGuCGGa--GGCGUAUC-CGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 16379 0.73 0.320831
Target:  5'- -aGugAGCCUCCGCGggcacguccuGGCGAUGCa -3'
miRNA:   3'- acUugUCGGAGGCGUau--------CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 17140 0.71 0.418824
Target:  5'- cUGGACGGCgUCUGCuacuGGC-GCGCUg -3'
miRNA:   3'- -ACUUGUCGgAGGCGuau-CCGuUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 18330 0.66 0.678784
Target:  5'- aGGGCAGCCgcaacgcgCUGCcuuacgGGGCggUGCa -3'
miRNA:   3'- aCUUGUCGGa-------GGCGua----UCCGuuGCGa -5'
11602 5' -54.5 NC_003085.1 + 19134 0.68 0.577247
Target:  5'- -cGACAGCgUCCGCcaGGGCc-CGCUg -3'
miRNA:   3'- acUUGUCGgAGGCGuaUCCGuuGCGA- -5'
11602 5' -54.5 NC_003085.1 + 20050 0.74 0.261012
Target:  5'- ----gAGCCUCCGcCAUGGGCuggccGCGCUg -3'
miRNA:   3'- acuugUCGGAGGC-GUAUCCGu----UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 20602 0.68 0.532928
Target:  5'- -cGGCAGCg-CCGCGgaagucGGGCGGCGCg -3'
miRNA:   3'- acUUGUCGgaGGCGUa-----UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 21355 0.66 0.701121
Target:  5'- gGAGCGcGCCaUCCGCGUgguGGGCGucuACGaCa -3'
miRNA:   3'- aCUUGU-CGG-AGGCGUA---UCCGU---UGC-Ga -5'
11602 5' -54.5 NC_003085.1 + 21480 0.68 0.554958
Target:  5'- aGGGCGGCCUgCGC---GGCGugGUg -3'
miRNA:   3'- aCUUGUCGGAgGCGuauCCGUugCGa -5'
11602 5' -54.5 NC_003085.1 + 22327 0.66 0.712189
Target:  5'- aGGugAGCaC-CUGCGUGGGCGucugcgacgACGCg -3'
miRNA:   3'- aCUugUCG-GaGGCGUAUCCGU---------UGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.