Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11602 | 5' | -54.5 | NC_003085.1 | + | 302 | 0.68 | 0.588467 |
Target: 5'- cGGGCGGCCUCCGaccucauGGaGAUGCUc -3' miRNA: 3'- aCUUGUCGGAGGCguau---CCgUUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 708 | 0.67 | 0.633641 |
Target: 5'- gGGGCAa-CUCCGCGUGGcGCcuGACGCg -3' miRNA: 3'- aCUUGUcgGAGGCGUAUC-CG--UUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 1049 | 0.66 | 0.667539 |
Target: 5'- gGAGgaAGCCagcgCCGCcgAGGCAgacaaugcgGCGCUg -3' miRNA: 3'- aCUUg-UCGGa---GGCGuaUCCGU---------UGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 1351 | 0.73 | 0.280122 |
Target: 5'- cGGACGGCUUCCGCcUGGGCucuacaucccucccGACGUc -3' miRNA: 3'- aCUUGUCGGAGGCGuAUCCG--------------UUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 3202 | 0.67 | 0.599727 |
Target: 5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3' miRNA: 3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 5241 | 0.72 | 0.337304 |
Target: 5'- -aAGCGGCCUCCaacGCGaaUGGGUGGCGCg -3' miRNA: 3'- acUUGUCGGAGG---CGU--AUCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 5835 | 0.68 | 0.566074 |
Target: 5'- cGGAUGGCCUCCcgugcccgcucuGCAcucgggauGGCAGCGCc -3' miRNA: 3'- aCUUGUCGGAGG------------CGUau------CCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 11609 | 0.71 | 0.38113 |
Target: 5'- cUGGcCGGCCagCGC--AGGCAGCGCUa -3' miRNA: 3'- -ACUuGUCGGagGCGuaUCCGUUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 13259 | 0.67 | 0.611016 |
Target: 5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3' miRNA: 3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 13710 | 0.66 | 0.65626 |
Target: 5'- cGAAgAGCCuguuccuguUCCGUcgAGGUcACGCg -3' miRNA: 3'- aCUUgUCGG---------AGGCGuaUCCGuUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 15123 | 0.71 | 0.399693 |
Target: 5'- gGAGC-GCCgcgCCGCGUGGuGCGACGa- -3' miRNA: 3'- aCUUGuCGGa--GGCGUAUC-CGUUGCga -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 16379 | 0.73 | 0.320831 |
Target: 5'- -aGugAGCCUCCGCGggcacguccuGGCGAUGCa -3' miRNA: 3'- acUugUCGGAGGCGUau--------CCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 17140 | 0.71 | 0.418824 |
Target: 5'- cUGGACGGCgUCUGCuacuGGC-GCGCUg -3' miRNA: 3'- -ACUUGUCGgAGGCGuau-CCGuUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 18330 | 0.66 | 0.678784 |
Target: 5'- aGGGCAGCCgcaacgcgCUGCcuuacgGGGCggUGCa -3' miRNA: 3'- aCUUGUCGGa-------GGCGua----UCCGuuGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 19134 | 0.68 | 0.577247 |
Target: 5'- -cGACAGCgUCCGCcaGGGCc-CGCUg -3' miRNA: 3'- acUUGUCGgAGGCGuaUCCGuuGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 20050 | 0.74 | 0.261012 |
Target: 5'- ----gAGCCUCCGcCAUGGGCuggccGCGCUg -3' miRNA: 3'- acuugUCGGAGGC-GUAUCCGu----UGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 20602 | 0.68 | 0.532928 |
Target: 5'- -cGGCAGCg-CCGCGgaagucGGGCGGCGCg -3' miRNA: 3'- acUUGUCGgaGGCGUa-----UCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 21355 | 0.66 | 0.701121 |
Target: 5'- gGAGCGcGCCaUCCGCGUgguGGGCGucuACGaCa -3' miRNA: 3'- aCUUGU-CGG-AGGCGUA---UCCGU---UGC-Ga -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 21480 | 0.68 | 0.554958 |
Target: 5'- aGGGCGGCCUgCGC---GGCGugGUg -3' miRNA: 3'- aCUUGUCGGAgGCGuauCCGUugCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 22327 | 0.66 | 0.712189 |
Target: 5'- aGGugAGCaC-CUGCGUGGGCGucugcgacgACGCg -3' miRNA: 3'- aCUugUCG-GaGGCGUAUCCGU---------UGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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