miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 21355 0.66 0.701121
Target:  5'- gGAGCGcGCCaUCCGCGUgguGGGCGucuACGaCa -3'
miRNA:   3'- aCUUGU-CGG-AGGCGUA---UCCGU---UGC-Ga -5'
11602 5' -54.5 NC_003085.1 + 23652 0.66 0.678784
Target:  5'- cGAGCAGg--CCGCGcAGGCgAACGCc -3'
miRNA:   3'- aCUUGUCggaGGCGUaUCCG-UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 18330 0.66 0.678784
Target:  5'- aGGGCAGCCgcaacgcgCUGCcuuacgGGGCggUGCa -3'
miRNA:   3'- aCUUGUCGGa-------GGCGua----UCCGuuGCGa -5'
11602 5' -54.5 NC_003085.1 + 13710 0.66 0.65626
Target:  5'- cGAAgAGCCuguuccuguUCCGUcgAGGUcACGCg -3'
miRNA:   3'- aCUUgUCGG---------AGGCGuaUCCGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 26972 0.66 0.689982
Target:  5'- cGAGCucGGCCUgCGCAgccggcUGGGCuacCGCg -3'
miRNA:   3'- aCUUG--UCGGAgGCGU------AUCCGuu-GCGa -5'
11602 5' -54.5 NC_003085.1 + 37674 0.66 0.65626
Target:  5'- gGGGCAGCCgacaCGCccggAGcGCGGCGCc -3'
miRNA:   3'- aCUUGUCGGag--GCGua--UC-CGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 24822 0.66 0.65626
Target:  5'- cGAgguucGCcuCCUCCGCcgAGGUgaAGCGCUg -3'
miRNA:   3'- aCU-----UGucGGAGGCGuaUCCG--UUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 1049 0.66 0.667539
Target:  5'- gGAGgaAGCCagcgCCGCcgAGGCAgacaaugcgGCGCUg -3'
miRNA:   3'- aCUUg-UCGGa---GGCGuaUCCGU---------UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 26565 0.66 0.667539
Target:  5'- -cGGCAGCCUCCGCc--GGaguCGCa -3'
miRNA:   3'- acUUGUCGGAGGCGuauCCguuGCGa -5'
11602 5' -54.5 NC_003085.1 + 35719 0.66 0.678784
Target:  5'- -cAACGGCCUCC-CGUuGGGCGGCuucGCg -3'
miRNA:   3'- acUUGUCGGAGGcGUA-UCCGUUG---CGa -5'
11602 5' -54.5 NC_003085.1 + 45882 0.66 0.689982
Target:  5'- --cGCcGCCUCgGCAgcgAGGC-GCGCUu -3'
miRNA:   3'- acuUGuCGGAGgCGUa--UCCGuUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 22797 0.66 0.701121
Target:  5'- -cAACGGCCgcucCCGCccaggAGGCGACGg- -3'
miRNA:   3'- acUUGUCGGa---GGCGua---UCCGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 30001 0.66 0.712189
Target:  5'- gGAGCGGCCcugggCgGCcuuGGCGACGUc -3'
miRNA:   3'- aCUUGUCGGa----GgCGuauCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 22327 0.66 0.712189
Target:  5'- aGGugAGCaC-CUGCGUGGGCGucugcgacgACGCg -3'
miRNA:   3'- aCUugUCG-GaGGCGUAUCCGU---------UGCGa -5'
11602 5' -54.5 NC_003085.1 + 42711 0.67 0.630245
Target:  5'- uUGAGCGGCggcacCUCagGCGUGGGCGucggggcgaugcggGCGCg -3'
miRNA:   3'- -ACUUGUCG-----GAGg-CGUAUCCGU--------------UGCGa -5'
11602 5' -54.5 NC_003085.1 + 23764 0.67 0.611016
Target:  5'- gUGAgagGCAGCCUCgaagcgGCAUGGGCGAauuCGUc -3'
miRNA:   3'- -ACU---UGUCGGAGg-----CGUAUCCGUU---GCGa -5'
11602 5' -54.5 NC_003085.1 + 13259 0.67 0.611016
Target:  5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3'
miRNA:   3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 3202 0.67 0.599727
Target:  5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3'
miRNA:   3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 46200 0.67 0.5986
Target:  5'- -cAACGGCCUCCggucguguuguggGCAUAGGCGAaggGUUc -3'
miRNA:   3'- acUUGUCGGAGG-------------CGUAUCCGUUg--CGA- -5'
11602 5' -54.5 NC_003085.1 + 39259 0.67 0.633641
Target:  5'- -uGGCGGCCUcCCGCGggugagcAGGUcGCGCa -3'
miRNA:   3'- acUUGUCGGA-GGCGUa------UCCGuUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.