miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 26972 0.66 0.689982
Target:  5'- cGAGCucGGCCUgCGCAgccggcUGGGCuacCGCg -3'
miRNA:   3'- aCUUG--UCGGAgGCGU------AUCCGuu-GCGa -5'
11602 5' -54.5 NC_003085.1 + 46200 0.67 0.5986
Target:  5'- -cAACGGCCUCCggucguguuguggGCAUAGGCGAaggGUUc -3'
miRNA:   3'- acUUGUCGGAGG-------------CGUAUCCGUUg--CGA- -5'
11602 5' -54.5 NC_003085.1 + 3202 0.67 0.599727
Target:  5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3'
miRNA:   3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 13259 0.67 0.611016
Target:  5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3'
miRNA:   3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 23764 0.67 0.611016
Target:  5'- gUGAgagGCAGCCUCgaagcgGCAUGGGCGAauuCGUc -3'
miRNA:   3'- -ACU---UGUCGGAGg-----CGUAUCCGUU---GCGa -5'
11602 5' -54.5 NC_003085.1 + 42711 0.67 0.630245
Target:  5'- uUGAGCGGCggcacCUCagGCGUGGGCGucggggcgaugcggGCGCg -3'
miRNA:   3'- -ACUUGUCG-----GAGg-CGUAUCCGU--------------UGCGa -5'
11602 5' -54.5 NC_003085.1 + 13710 0.66 0.65626
Target:  5'- cGAAgAGCCuguuccuguUCCGUcgAGGUcACGCg -3'
miRNA:   3'- aCUUgUCGG---------AGGCGuaUCCGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 18330 0.66 0.678784
Target:  5'- aGGGCAGCCgcaacgcgCUGCcuuacgGGGCggUGCa -3'
miRNA:   3'- aCUUGUCGGa-------GGCGua----UCCGuuGCGa -5'
11602 5' -54.5 NC_003085.1 + 23652 0.66 0.678784
Target:  5'- cGAGCAGg--CCGCGcAGGCgAACGCc -3'
miRNA:   3'- aCUUGUCggaGGCGUaUCCG-UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 30507 0.68 0.577247
Target:  5'- -cGACAGCCagaUGCAggaacaggAGGCGGCGCg -3'
miRNA:   3'- acUUGUCGGag-GCGUa-------UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 39030 0.68 0.554958
Target:  5'- -cGACGGCa--UGCGUGGGCgAGCGCUg -3'
miRNA:   3'- acUUGUCGgagGCGUAUCCG-UUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 21480 0.68 0.554958
Target:  5'- aGGGCGGCCUgCGC---GGCGugGUg -3'
miRNA:   3'- aCUUGUCGGAgGCGuauCCGUugCGa -5'
11602 5' -54.5 NC_003085.1 + 43121 0.76 0.183527
Target:  5'- gGAACAGCCUUgGCGUAGaGC-GCGCc -3'
miRNA:   3'- aCUUGUCGGAGgCGUAUC-CGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 48394 0.75 0.234671
Target:  5'- cGAGCAGCg-CCGCAUugucugccucGGCGGCGCUg -3'
miRNA:   3'- aCUUGUCGgaGGCGUAu---------CCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 1351 0.73 0.280122
Target:  5'- cGGACGGCUUCCGCcUGGGCucuacaucccucccGACGUc -3'
miRNA:   3'- aCUUGUCGGAGGCGuAUCCG--------------UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 15123 0.71 0.399693
Target:  5'- gGAGC-GCCgcgCCGCGUGGuGCGACGa- -3'
miRNA:   3'- aCUUGuCGGa--GGCGUAUC-CGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 17140 0.71 0.418824
Target:  5'- cUGGACGGCgUCUGCuacuGGC-GCGCUg -3'
miRNA:   3'- -ACUUGUCGgAGGCGuau-CCGuUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 26068 0.7 0.458695
Target:  5'- cGAGCAGCUUucUCGCA-AGGCAcggugACGCa -3'
miRNA:   3'- aCUUGUCGGA--GGCGUaUCCGU-----UGCGa -5'
11602 5' -54.5 NC_003085.1 + 43529 0.69 0.489885
Target:  5'- gGAACGGCg-CCGa--AGGCGGCGCg -3'
miRNA:   3'- aCUUGUCGgaGGCguaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 48933 0.69 0.511219
Target:  5'- ---cCAaUCUCCGCGaGGGCAGCGCg -3'
miRNA:   3'- acuuGUcGGAGGCGUaUCCGUUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.