Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11602 | 5' | -54.5 | NC_003085.1 | + | 43529 | 0.69 | 0.489885 |
Target: 5'- gGAACGGCg-CCGa--AGGCGGCGCg -3' miRNA: 3'- aCUUGUCGgaGGCguaUCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 48933 | 0.69 | 0.511219 |
Target: 5'- ---cCAaUCUCCGCGaGGGCAGCGCg -3' miRNA: 3'- acuuGUcGGAGGCGUaUCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 21480 | 0.68 | 0.554958 |
Target: 5'- aGGGCGGCCUgCGC---GGCGugGUg -3' miRNA: 3'- aCUUGUCGGAgGCGuauCCGUugCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 39030 | 0.68 | 0.554958 |
Target: 5'- -cGACGGCa--UGCGUGGGCgAGCGCUg -3' miRNA: 3'- acUUGUCGgagGCGUAUCCG-UUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 28606 | 0.67 | 0.622324 |
Target: 5'- gUGGGCGGCa-CCGCAgcGGCGA-GCUc -3' miRNA: 3'- -ACUUGUCGgaGGCGUauCCGUUgCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 48608 | 0.67 | 0.611016 |
Target: 5'- cGGAguGCCUUCG----GGCAGCGCg -3' miRNA: 3'- aCUUguCGGAGGCguauCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 28792 | 0.67 | 0.611016 |
Target: 5'- uUGAGCAGCCgcUCCaGCAacuccgacGCGACGCg -3' miRNA: 3'- -ACUUGUCGG--AGG-CGUauc-----CGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 47890 | 0.67 | 0.611016 |
Target: 5'- cGuAC-GCCgcgCCGCAcugcAGGCGACGCg -3' miRNA: 3'- aCuUGuCGGa--GGCGUa---UCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 39112 | 0.67 | 0.599727 |
Target: 5'- gGAGCGuccgcgguGCCUCC-CGggAGGCGACGUg -3' miRNA: 3'- aCUUGU--------CGGAGGcGUa-UCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 302 | 0.68 | 0.588467 |
Target: 5'- cGGGCGGCCUCCGaccucauGGaGAUGCUc -3' miRNA: 3'- aCUUGUCGGAGGCguau---CCgUUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 19134 | 0.68 | 0.577247 |
Target: 5'- -cGACAGCgUCCGCcaGGGCc-CGCUg -3' miRNA: 3'- acUUGUCGgAGGCGuaUCCGuuGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 708 | 0.67 | 0.633641 |
Target: 5'- gGGGCAa-CUCCGCGUGGcGCcuGACGCg -3' miRNA: 3'- aCUUGUcgGAGGCGUAUC-CG--UUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 39259 | 0.67 | 0.633641 |
Target: 5'- -uGGCGGCCUcCCGCGggugagcAGGUcGCGCa -3' miRNA: 3'- acUUGUCGGA-GGCGUa------UCCGuUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 37674 | 0.66 | 0.65626 |
Target: 5'- gGGGCAGCCgacaCGCccggAGcGCGGCGCc -3' miRNA: 3'- aCUUGUCGGag--GCGua--UC-CGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 24822 | 0.66 | 0.65626 |
Target: 5'- cGAgguucGCcuCCUCCGCcgAGGUgaAGCGCUg -3' miRNA: 3'- aCU-----UGucGGAGGCGuaUCCG--UUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 1049 | 0.66 | 0.667539 |
Target: 5'- gGAGgaAGCCagcgCCGCcgAGGCAgacaaugcgGCGCUg -3' miRNA: 3'- aCUUg-UCGGa---GGCGuaUCCGU---------UGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 26565 | 0.66 | 0.667539 |
Target: 5'- -cGGCAGCCUCCGCc--GGaguCGCa -3' miRNA: 3'- acUUGUCGGAGGCGuauCCguuGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 35719 | 0.66 | 0.678784 |
Target: 5'- -cAACGGCCUCC-CGUuGGGCGGCuucGCg -3' miRNA: 3'- acUUGUCGGAGGcGUA-UCCGUUG---CGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 45882 | 0.66 | 0.689982 |
Target: 5'- --cGCcGCCUCgGCAgcgAGGC-GCGCUu -3' miRNA: 3'- acuUGuCGGAGgCGUa--UCCGuUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 20050 | 0.74 | 0.261012 |
Target: 5'- ----gAGCCUCCGcCAUGGGCuggccGCGCUg -3' miRNA: 3'- acuugUCGGAGGC-GUAUCCGu----UGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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