miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 39080 1.07 0.001118
Target:  5'- gUGAACAGCCUCCGCAUAGGCAACGCUc -3'
miRNA:   3'- -ACUUGUCGGAGGCGUAUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 43121 0.76 0.183527
Target:  5'- gGAACAGCCUUgGCGUAGaGC-GCGCc -3'
miRNA:   3'- aCUUGUCGGAGgCGUAUC-CGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 48394 0.75 0.234671
Target:  5'- cGAGCAGCg-CCGCAUugucugccucGGCGGCGCUg -3'
miRNA:   3'- aCUUGUCGgaGGCGUAu---------CCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 20050 0.74 0.261012
Target:  5'- ----gAGCCUCCGcCAUGGGCuggccGCGCUg -3'
miRNA:   3'- acuugUCGGAGGC-GUAUCCGu----UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 1351 0.73 0.280122
Target:  5'- cGGACGGCUUCCGCcUGGGCucuacaucccucccGACGUc -3'
miRNA:   3'- aCUUGUCGGAGGCGuAUCCG--------------UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 44341 0.73 0.304967
Target:  5'- cGGGCguAGCCUUCGCccgcGGCGACGCg -3'
miRNA:   3'- aCUUG--UCGGAGGCGuau-CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 16379 0.73 0.320831
Target:  5'- -aGugAGCCUCCGCGggcacguccuGGCGAUGCa -3'
miRNA:   3'- acUugUCGGAGGCGUau--------CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 26109 0.72 0.328991
Target:  5'- gGGGCugcGCCUCgGCGgccGGCGGCGCUu -3'
miRNA:   3'- aCUUGu--CGGAGgCGUau-CCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 5241 0.72 0.337304
Target:  5'- -aAGCGGCCUCCaacGCGaaUGGGUGGCGCg -3'
miRNA:   3'- acUUGUCGGAGG---CGU--AUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 42217 0.72 0.345768
Target:  5'- aGAGCcuguccccgGGCUgUCCGUAgGGGCAGCGCUg -3'
miRNA:   3'- aCUUG---------UCGG-AGGCGUaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 11609 0.71 0.38113
Target:  5'- cUGGcCGGCCagCGC--AGGCAGCGCUa -3'
miRNA:   3'- -ACUuGUCGGagGCGuaUCCGUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 15123 0.71 0.399693
Target:  5'- gGAGC-GCCgcgCCGCGUGGuGCGACGa- -3'
miRNA:   3'- aCUUGuCGGa--GGCGUAUC-CGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 17140 0.71 0.418824
Target:  5'- cUGGACGGCgUCUGCuacuGGC-GCGCUg -3'
miRNA:   3'- -ACUUGUCGgAGGCGuau-CCGuUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 31107 0.71 0.418824
Target:  5'- cGAcuccACGGCCUgcaCCGCcccguaAGGCAGCGCg -3'
miRNA:   3'- aCU----UGUCGGA---GGCGua----UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 26068 0.7 0.458695
Target:  5'- cGAGCAGCUUucUCGCA-AGGCAcggugACGCa -3'
miRNA:   3'- aCUUGUCGGA--GGCGUaUCCGU-----UGCGa -5'
11602 5' -54.5 NC_003085.1 + 46430 0.7 0.458695
Target:  5'- -cGACAGCCUUCGCGUgcaccgucuGGGCGucguccguGCGCc -3'
miRNA:   3'- acUUGUCGGAGGCGUA---------UCCGU--------UGCGa -5'
11602 5' -54.5 NC_003085.1 + 23931 0.7 0.468977
Target:  5'- aUGGGCAGCCUCCGcCAUcuGCucaGCg -3'
miRNA:   3'- -ACUUGUCGGAGGC-GUAucCGuugCGa -5'
11602 5' -54.5 NC_003085.1 + 26202 0.69 0.479375
Target:  5'- cGAGCugcGCCUUgUGCGcGGGCGGCGCg -3'
miRNA:   3'- aCUUGu--CGGAG-GCGUaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 43529 0.69 0.489885
Target:  5'- gGAACGGCg-CCGa--AGGCGGCGCg -3'
miRNA:   3'- aCUUGUCGgaGGCguaUCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 31158 0.69 0.489885
Target:  5'- cGGACGGCCagCGCcgGGGCGugcacCGCc -3'
miRNA:   3'- aCUUGUCGGagGCGuaUCCGUu----GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.