miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11602 5' -54.5 NC_003085.1 + 22327 0.66 0.712189
Target:  5'- aGGugAGCaC-CUGCGUGGGCGucugcgacgACGCg -3'
miRNA:   3'- aCUugUCG-GaGGCGUAUCCGU---------UGCGa -5'
11602 5' -54.5 NC_003085.1 + 20602 0.68 0.532928
Target:  5'- -cGGCAGCg-CCGCGgaagucGGGCGGCGCg -3'
miRNA:   3'- acUUGUCGgaGGCGUa-----UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 31158 0.69 0.489885
Target:  5'- cGGACGGCCagCGCcgGGGCGugcacCGCc -3'
miRNA:   3'- aCUUGUCGGagGCGuaUCCGUu----GCGa -5'
11602 5' -54.5 NC_003085.1 + 20050 0.74 0.261012
Target:  5'- ----gAGCCUCCGcCAUGGGCuggccGCGCUg -3'
miRNA:   3'- acuugUCGGAGGC-GUAUCCGu----UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 1049 0.66 0.667539
Target:  5'- gGAGgaAGCCagcgCCGCcgAGGCAgacaaugcgGCGCUg -3'
miRNA:   3'- aCUUg-UCGGa---GGCGuaUCCGU---------UGCGA- -5'
11602 5' -54.5 NC_003085.1 + 24822 0.66 0.65626
Target:  5'- cGAgguucGCcuCCUCCGCcgAGGUgaAGCGCUg -3'
miRNA:   3'- aCU-----UGucGGAGGCGuaUCCG--UUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 39259 0.67 0.633641
Target:  5'- -uGGCGGCCUcCCGCGggugagcAGGUcGCGCa -3'
miRNA:   3'- acUUGUCGGA-GGCGUa------UCCGuUGCGa -5'
11602 5' -54.5 NC_003085.1 + 708 0.67 0.633641
Target:  5'- gGGGCAa-CUCCGCGUGGcGCcuGACGCg -3'
miRNA:   3'- aCUUGUcgGAGGCGUAUC-CG--UUGCGa -5'
11602 5' -54.5 NC_003085.1 + 28792 0.67 0.611016
Target:  5'- uUGAGCAGCCgcUCCaGCAacuccgacGCGACGCg -3'
miRNA:   3'- -ACUUGUCGG--AGG-CGUauc-----CGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 5835 0.68 0.566074
Target:  5'- cGGAUGGCCUCCcgugcccgcucuGCAcucgggauGGCAGCGCc -3'
miRNA:   3'- aCUUGUCGGAGG------------CGUau------CCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 39112 0.67 0.599727
Target:  5'- gGAGCGuccgcgguGCCUCC-CGggAGGCGACGUg -3'
miRNA:   3'- aCUUGU--------CGGAGGcGUa-UCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 48608 0.67 0.611016
Target:  5'- cGGAguGCCUUCG----GGCAGCGCg -3'
miRNA:   3'- aCUUguCGGAGGCguauCCGUUGCGa -5'
11602 5' -54.5 NC_003085.1 + 45882 0.66 0.689982
Target:  5'- --cGCcGCCUCgGCAgcgAGGC-GCGCUu -3'
miRNA:   3'- acuUGuCGGAGgCGUa--UCCGuUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 302 0.68 0.588467
Target:  5'- cGGGCGGCCUCCGaccucauGGaGAUGCUc -3'
miRNA:   3'- aCUUGUCGGAGGCguau---CCgUUGCGA- -5'
11602 5' -54.5 NC_003085.1 + 35719 0.66 0.678784
Target:  5'- -cAACGGCCUCC-CGUuGGGCGGCuucGCg -3'
miRNA:   3'- acUUGUCGGAGGcGUA-UCCGUUG---CGa -5'
11602 5' -54.5 NC_003085.1 + 28606 0.67 0.622324
Target:  5'- gUGGGCGGCa-CCGCAgcGGCGA-GCUc -3'
miRNA:   3'- -ACUUGUCGgaGGCGUauCCGUUgCGA- -5'
11602 5' -54.5 NC_003085.1 + 19134 0.68 0.577247
Target:  5'- -cGACAGCgUCCGCcaGGGCc-CGCUg -3'
miRNA:   3'- acUUGUCGgAGGCGuaUCCGuuGCGA- -5'
11602 5' -54.5 NC_003085.1 + 27367 0.69 0.515532
Target:  5'- cUGGGCGGCCugcuucugcgccucuUCCGCGgcGGCGAUGg- -3'
miRNA:   3'- -ACUUGUCGG---------------AGGCGUauCCGUUGCga -5'
11602 5' -54.5 NC_003085.1 + 26565 0.66 0.667539
Target:  5'- -cGGCAGCCUCCGCc--GGaguCGCa -3'
miRNA:   3'- acUUGUCGGAGGCGuauCCguuGCGa -5'
11602 5' -54.5 NC_003085.1 + 37674 0.66 0.65626
Target:  5'- gGGGCAGCCgacaCGCccggAGcGCGGCGCc -3'
miRNA:   3'- aCUUGUCGGag--GCGua--UC-CGUUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.