miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 9338 0.67 0.541006
Target:  5'- aCGCGcGGcGGcc-AGGACCAGCaGCCg -3'
miRNA:   3'- cGCGUuCCaCCuacUCCUGGUCG-CGG- -5'
11604 3' -56.7 NC_003085.1 + 47147 0.73 0.233582
Target:  5'- aGCgGCGGccGGUGGc-GAGGcagGCCAGCGCCg -3'
miRNA:   3'- -CG-CGUU--CCACCuaCUCC---UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 6289 0.69 0.410435
Target:  5'- cGCGCGGcGGUGGAgcgacuGGAgCAG-GCCg -3'
miRNA:   3'- -CGCGUU-CCACCUacu---CCUgGUCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 49157 0.67 0.541006
Target:  5'- uCGCGGGGgcagcGGAcGGGGACuCGGCGgUCa -3'
miRNA:   3'- cGCGUUCCa----CCUaCUCCUG-GUCGC-GG- -5'
11604 3' -56.7 NC_003085.1 + 24230 0.67 0.551704
Target:  5'- aGCGCAccAGGgcggcgccgGuGAUGAGGuACCAGcCGUa -3'
miRNA:   3'- -CGCGU--UCCa--------C-CUACUCC-UGGUC-GCGg -5'
11604 3' -56.7 NC_003085.1 + 4652 0.67 0.562465
Target:  5'- cGCGCccccGGUGGcaGAGGcgaGCCuuucacGGCGCCg -3'
miRNA:   3'- -CGCGuu--CCACCuaCUCC---UGG------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 41459 0.75 0.189044
Target:  5'- cGCGCAAGGcUGGGgcgcGGGugaaguaccgcGCCAGCGCUg -3'
miRNA:   3'- -CGCGUUCC-ACCUac--UCC-----------UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 20816 0.8 0.089383
Target:  5'- uGC-CGGGGUGGAcgccauccuggaUGAGGcgACCGGCGCCg -3'
miRNA:   3'- -CGcGUUCCACCU------------ACUCC--UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 10151 0.67 0.573282
Target:  5'- uGCGCGGcGG-GGAguaccgcGAGGACCGG-GCg -3'
miRNA:   3'- -CGCGUU-CCaCCUa------CUCCUGGUCgCGg -5'
11604 3' -56.7 NC_003085.1 + 15379 0.67 0.562465
Target:  5'- aCGCGgaugcAGGaGcGUGAGGACgAGCGUCa -3'
miRNA:   3'- cGCGU-----UCCaCcUACUCCUGgUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 27616 0.69 0.419794
Target:  5'- uGCGCGGuGuGUGGAgccugGGGGGCUcGcCGCCa -3'
miRNA:   3'- -CGCGUU-C-CACCUa----CUCCUGGuC-GCGG- -5'
11604 3' -56.7 NC_003085.1 + 39614 0.69 0.410435
Target:  5'- aGCGCAccgagcAGGUGGccGcAGGAgUGGCGCa -3'
miRNA:   3'- -CGCGU------UCCACCuaC-UCCUgGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 40718 0.7 0.392112
Target:  5'- cGCGCc-GGUGGAccucucGCCGGCGCCg -3'
miRNA:   3'- -CGCGuuCCACCUacucc-UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 16044 0.71 0.332321
Target:  5'- cGgGCGAGGU--AUG-GGACguGCGCCa -3'
miRNA:   3'- -CgCGUUCCAccUACuCCUGguCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 21151 0.75 0.179141
Target:  5'- cCGgAAGGUGGAcugguacgugGAGGGCuaCAGCGCCg -3'
miRNA:   3'- cGCgUUCCACCUa---------CUCCUG--GUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 23445 0.67 0.541006
Target:  5'- gGCGCAgcAGGgacgcauGAcgGAGGcCCAGCGCa -3'
miRNA:   3'- -CGCGU--UCCac-----CUa-CUCCuGGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 17989 0.67 0.541006
Target:  5'- cCGCAGGGcacGGAgcugcGAgagcgcGGACUGGCGCCc -3'
miRNA:   3'- cGCGUUCCa--CCUa----CU------CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 592 0.67 0.551704
Target:  5'- nCGCAGGGUGucuc--GACUGGCGCCg -3'
miRNA:   3'- cGCGUUCCACcuacucCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 11660 0.67 0.551704
Target:  5'- uGCGCcGGGUGGccGAGGAgguGGgGCUg -3'
miRNA:   3'- -CGCGuUCCACCuaCUCCUgg-UCgCGG- -5'
11604 3' -56.7 NC_003085.1 + 12681 0.67 0.562465
Target:  5'- uGCGCcugccuccGGGUGGAUGAc-GCCA-CGCCg -3'
miRNA:   3'- -CGCGu-------UCCACCUACUccUGGUcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.