miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11604 3' -56.7 NC_003085.1 + 49157 0.67 0.541006
Target:  5'- uCGCGGGGgcagcGGAcGGGGACuCGGCGgUCa -3'
miRNA:   3'- cGCGUUCCa----CCUaCUCCUG-GUCGC-GG- -5'
11604 3' -56.7 NC_003085.1 + 48751 0.67 0.519829
Target:  5'- gGCGC-GGGUGGAccUGcucAGG-CC-GCGCCc -3'
miRNA:   3'- -CGCGuUCCACCU--AC---UCCuGGuCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 47989 0.68 0.509362
Target:  5'- -aGCAAGucgcGGAggGAGGACgCGGCGCa -3'
miRNA:   3'- cgCGUUCca--CCUa-CUCCUG-GUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 47147 0.73 0.233582
Target:  5'- aGCgGCGGccGGUGGc-GAGGcagGCCAGCGCCg -3'
miRNA:   3'- -CG-CGUU--CCACCuaCUCC---UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 44443 0.66 0.624624
Target:  5'- uGCGaauGGUGGAUgugcugacacuugcGAGGGCUGcCGCCu -3'
miRNA:   3'- -CGCguuCCACCUA--------------CUCCUGGUcGCGG- -5'
11604 3' -56.7 NC_003085.1 + 42443 0.67 0.573282
Target:  5'- cGCGCGAGGgccuUGAGGgcGCCGGUGa- -3'
miRNA:   3'- -CGCGUUCCaccuACUCC--UGGUCGCgg -5'
11604 3' -56.7 NC_003085.1 + 42106 0.75 0.177696
Target:  5'- cGUGuCGAGGUGGcgGAGGACggcaagcgaaugcaCGGCGCg -3'
miRNA:   3'- -CGC-GUUCCACCuaCUCCUG--------------GUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 41459 0.75 0.189044
Target:  5'- cGCGCAAGGcUGGGgcgcGGGugaaguaccgcGCCAGCGCUg -3'
miRNA:   3'- -CGCGUUCC-ACCUac--UCC-----------UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 41258 0.71 0.332321
Target:  5'- cGCGCGgcAGGcUGGAcUGGcGGGCCaugcacAGCGCCc -3'
miRNA:   3'- -CGCGU--UCC-ACCU-ACU-CCUGG------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 40954 0.68 0.458478
Target:  5'- uGCGCccgcuGGUGcGcgucguacUGGcGGGCCAGCGCCu -3'
miRNA:   3'- -CGCGuu---CCAC-Cu-------ACU-CCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 40718 0.7 0.392112
Target:  5'- cGCGCc-GGUGGAccucucGCCGGCGCCg -3'
miRNA:   3'- -CGCGuuCCACCUacucc-UGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 39725 1.14 0.000262
Target:  5'- aGCGCAAGGUGGAUGAGGACCAGCGCCg -3'
miRNA:   3'- -CGCGUUCCACCUACUCCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 39614 0.69 0.410435
Target:  5'- aGCGCAccgagcAGGUGGccGcAGGAgUGGCGCa -3'
miRNA:   3'- -CGCGU------UCCACCuaC-UCCUgGUCGCGg -5'
11604 3' -56.7 NC_003085.1 + 38986 0.67 0.530379
Target:  5'- cGCGCAgcAGGUcGGccagccGAGGggcGCCAaaGCGCCg -3'
miRNA:   3'- -CGCGU--UCCA-CCua----CUCC---UGGU--CGCGG- -5'
11604 3' -56.7 NC_003085.1 + 38780 0.66 0.584147
Target:  5'- cGCGCAGGGcUGG-UGuGu-CCAGCacGCCg -3'
miRNA:   3'- -CGCGUUCC-ACCuACuCcuGGUCG--CGG- -5'
11604 3' -56.7 NC_003085.1 + 38682 0.66 0.595051
Target:  5'- uGCGCGgaagAGGUGGcAUGccc-CCAGCGUCu -3'
miRNA:   3'- -CGCGU----UCCACC-UACuccuGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 32883 0.71 0.308826
Target:  5'- aGCGCAuuGGUGGAgcaucGGGGCCGucCGCCu -3'
miRNA:   3'- -CGCGUu-CCACCUac---UCCUGGUc-GCGG- -5'
11604 3' -56.7 NC_003085.1 + 32282 0.66 0.58197
Target:  5'- cGCGCGgaacucccggcagAGGUGGuucagGAGGcACUugacacaGGUGCCa -3'
miRNA:   3'- -CGCGU-------------UCCACCua---CUCC-UGG-------UCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 30713 0.82 0.061555
Target:  5'- gGCGCAAGGgGGAaGcGGACCGGCGUCc -3'
miRNA:   3'- -CGCGUUCCaCCUaCuCCUGGUCGCGG- -5'
11604 3' -56.7 NC_003085.1 + 28805 0.66 0.632307
Target:  5'- gGCGCGAGGagugccgcUGGcucaaggaguaggccAUGGGGAagcaagcaCCcGCGCCg -3'
miRNA:   3'- -CGCGUUCC--------ACC---------------UACUCCU--------GGuCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.