Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 3' | -58.7 | NC_003085.1 | + | 41160 | 0.67 | 0.47668 |
Target: 5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3' miRNA: 3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42479 | 0.67 | 0.466877 |
Target: 5'- gGCgUCAUCuCCGaGACGuGAGGCGaaucgCCg -3' miRNA: 3'- gCGgAGUGG-GGC-CUGCuCUUCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43747 | 0.67 | 0.45718 |
Target: 5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3' miRNA: 3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 24658 | 0.67 | 0.486583 |
Target: 5'- aGCCgCGCgCCGcGACGGGcuGAGCGgcaCCa -3' miRNA: 3'- gCGGaGUGgGGC-CUGCUC--UUCGCa--GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42219 | 0.67 | 0.466877 |
Target: 5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3' miRNA: 3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43397 | 0.67 | 0.444737 |
Target: 5'- cCGCUggugCAUCCCGGugGggcucgggagaaucAGGucauccuggcgcGGCGUCCg -3' miRNA: 3'- -GCGGa---GUGGGGCCugC--------------UCU------------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 9441 | 0.67 | 0.466877 |
Target: 5'- aGUC-CGgCCCGuACGGGAAGCGggCCg -3' miRNA: 3'- gCGGaGUgGGGCcUGCUCUUCGCa-GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 46100 | 0.67 | 0.45718 |
Target: 5'- gGUCUCauuggGCUCaCGGGCGucgGGGAGCGUCg -3' miRNA: 3'- gCGGAG-----UGGG-GCCUGC---UCUUCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 4168 | 0.67 | 0.496583 |
Target: 5'- aCGCCUCcgACgaaggaCCGGACGGGugugacGgGUCCa -3' miRNA: 3'- -GCGGAG--UGg-----GGCCUGCUCuu----CgCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 18436 | 0.67 | 0.447591 |
Target: 5'- gGCCUUugCCCGcGuCGuGGA-CGUCCu -3' miRNA: 3'- gCGGAGugGGGC-CuGCuCUUcGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 25640 | 0.67 | 0.486583 |
Target: 5'- gGCCgggCGCCCCgucuucaaGGACGuGGAGUacaUCCg -3' miRNA: 3'- gCGGa--GUGGGG--------CCUGCuCUUCGc--AGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 2423 | 0.68 | 0.392533 |
Target: 5'- uGaCCUCACCCUggGGugGuagauGGAGCG-CCu -3' miRNA: 3'- gC-GGAGUGGGG--CCugCu----CUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 18946 | 0.68 | 0.410397 |
Target: 5'- uCGCCUacaggGCCCCGcGACGGuGgcGCGcuUCCu -3' miRNA: 3'- -GCGGAg----UGGGGC-CUGCU-CuuCGC--AGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 32539 | 0.68 | 0.428756 |
Target: 5'- gGCCUUGCCCuccaCGGGCGGGGgcuGGgGUgCg -3' miRNA: 3'- gCGGAGUGGG----GCCUGCUCU---UCgCAgG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 11300 | 0.68 | 0.428756 |
Target: 5'- -aCCUgCGCCgCGG-CGGGGAGCG-CCa -3' miRNA: 3'- gcGGA-GUGGgGCCuGCUCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 40734 | 0.68 | 0.392533 |
Target: 5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3' miRNA: 3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 28638 | 0.69 | 0.375184 |
Target: 5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3' miRNA: 3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41991 | 0.69 | 0.372627 |
Target: 5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3' miRNA: 3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 24615 | 0.69 | 0.383794 |
Target: 5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3' miRNA: 3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 1515 | 0.69 | 0.366706 |
Target: 5'- gCGCCUCacgGCCgCCaGGCGuGAcuccAGCGUCUg -3' miRNA: 3'- -GCGGAG---UGG-GGcCUGCuCU----UCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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