Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 17914 | 0.66 | 0.669019 |
Target: 5'- uCUGGAGGUGGCaugucgagcccugUGGUGCcGUCuucCCACu -3' miRNA: 3'- -GACUUCCGCUG-------------ACCGUGuCAGu--GGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 36549 | 0.73 | 0.265327 |
Target: 5'- -cGAuucuGGCGGCcgUGGCGgGGUCGCCAUu -3' miRNA: 3'- gaCUu---CCGCUG--ACCGUgUCAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 39133 | 0.74 | 0.226478 |
Target: 5'- -gGGAGGCGACgUGGCGgGGgccgCAUCGCa -3' miRNA: 3'- gaCUUCCGCUG-ACCGUgUCa---GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 33210 | 0.75 | 0.203339 |
Target: 5'- cCUGGAGGCGGC-GGCGCAG-CACgAg -3' miRNA: 3'- -GACUUCCGCUGaCCGUGUCaGUGgUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 8938 | 0.67 | 0.625354 |
Target: 5'- -gGAcaguGGUGACUGuGC-CAGUCGCCu- -3' miRNA: 3'- gaCUu---CCGCUGAC-CGuGUCAGUGGug -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 47905 | 0.67 | 0.614149 |
Target: 5'- aCUGcAGGCGAC-GcGCACGGccUCGCgACa -3' miRNA: 3'- -GACuUCCGCUGaC-CGUGUC--AGUGgUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 12034 | 0.67 | 0.614149 |
Target: 5'- -gGuuGGCGcucgcuagccgcACUGGCGCaucGGUCACUACc -3' miRNA: 3'- gaCuuCCGC------------UGACCGUG---UCAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 29253 | 0.67 | 0.591796 |
Target: 5'- -gGAAGGCGuccgcgucgugGCUGGCcCAGUCgugcACCGg -3' miRNA: 3'- gaCUUCCGC-----------UGACCGuGUCAG----UGGUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 29156 | 0.68 | 0.547582 |
Target: 5'- gUGAAGGUGGCgGGCGCGuugggCACgGCc -3' miRNA: 3'- gACUUCCGCUGaCCGUGUca---GUGgUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 22859 | 0.7 | 0.4329 |
Target: 5'- -aGGAGGCGAC-GGUcgaagaagaGCGuGUCGCCGCc -3' miRNA: 3'- gaCUUCCGCUGaCCG---------UGU-CAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 1629 | 0.68 | 0.547582 |
Target: 5'- aUGAcgcGGaCGACUGGCACA---ACCGCa -3' miRNA: 3'- gACUu--CC-GCUGACCGUGUcagUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 12373 | 0.66 | 0.636567 |
Target: 5'- aCUGGAG-CGACUGcGCGCcGUcCACCuGCa -3' miRNA: 3'- -GACUUCcGCUGAC-CGUGuCA-GUGG-UG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 30488 | 0.7 | 0.423161 |
Target: 5'- -cGAAGGCGuuGCU-GCGCAGgaagcgCGCCACc -3' miRNA: 3'- gaCUUCCGC--UGAcCGUGUCa-----GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 28178 | 0.67 | 0.625354 |
Target: 5'- cCUGGgccAGGaCGAagucugGGCGCGG-CACCACc -3' miRNA: 3'- -GACU---UCC-GCUga----CCGUGUCaGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 20065 | 0.67 | 0.580667 |
Target: 5'- gCUGGccGCG-CUGGCGCAGcaacucCGCCAUg -3' miRNA: 3'- -GACUucCGCuGACCGUGUCa-----GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 48738 | 0.72 | 0.317271 |
Target: 5'- -cGGAGGCGACUgaGGCGCGGguggaccugcUCagGCCGCg -3' miRNA: 3'- gaCUUCCGCUGA--CCGUGUC----------AG--UGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 19206 | 0.75 | 0.214641 |
Target: 5'- cCUG-GGGCGGCgggGGCugGG-CGCCGCg -3' miRNA: 3'- -GACuUCCGCUGa--CCGugUCaGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 17489 | 0.67 | 0.625354 |
Target: 5'- ---cAGGCGuaACgGGgGCAGUCGCCAg -3' miRNA: 3'- gacuUCCGC--UGaCCgUGUCAGUGGUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 22622 | 0.67 | 0.614149 |
Target: 5'- -cGAGGGUGGCgggGGCACA--CGCCugGCg -3' miRNA: 3'- gaCUUCCGCUGa--CCGUGUcaGUGG--UG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 24269 | 0.7 | 0.4329 |
Target: 5'- aCUGcucGGCGACguUGGCGCucaUCGCCACc -3' miRNA: 3'- -GACuu-CCGCUG--ACCGUGuc-AGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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