Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 701 | 0.69 | 0.353833 |
Target: 5'- gGCcucGGGCGcGGccugaGCAGGUCCACCc -3' miRNA: 3'- aCGa--CCCGUaCCucg--UGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 1332 | 0.67 | 0.454804 |
Target: 5'- cUGCgauGGCGcUGGAGUACGGacggcuUCCGCCu -3' miRNA: 3'- -ACGac-CCGU-ACCUCGUGUCc-----AGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 2171 | 0.67 | 0.454804 |
Target: 5'- gUGCUGGaaGUGcGAaacuGcCACGGGUUCGCCg -3' miRNA: 3'- -ACGACCcgUAC-CU----C-GUGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 3272 | 0.76 | 0.123817 |
Target: 5'- aGC-GGGCAUGGAGCcuACGauGUCCGCCu -3' miRNA: 3'- aCGaCCCGUACCUCG--UGUc-CAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 3817 | 0.69 | 0.362334 |
Target: 5'- gUGCUGGGCcucacAGCcaaACAGGUgCGCCu -3' miRNA: 3'- -ACGACCCGuacc-UCG---UGUCCAgGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 6012 | 0.66 | 0.516018 |
Target: 5'- gGCUGGGCGcGGAuGUACGcccGGacgCCGCg -3' miRNA: 3'- aCGACCCGUaCCU-CGUGU---CCa--GGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 6421 | 0.66 | 0.526553 |
Target: 5'- uUGCUGGgGCAgggguggcgaGGAGUACGGGaCUugaACCc -3' miRNA: 3'- -ACGACC-CGUa---------CCUCGUGUCCaGG---UGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 8186 | 0.69 | 0.362334 |
Target: 5'- cGCUGGGCGcuGuGCAU-GGcCCGCCa -3' miRNA: 3'- aCGACCCGUacCuCGUGuCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 8673 | 0.68 | 0.388678 |
Target: 5'- gGCcuUGGGCGccGGGGUGCc-GUCCGCCa -3' miRNA: 3'- aCG--ACCCGUa-CCUCGUGucCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 11603 | 0.66 | 0.48495 |
Target: 5'- gGCaGGGCGgcgcgaaGGGGCuguGCAGGggcugCUACCa -3' miRNA: 3'- aCGaCCCGUa------CCUCG---UGUCCa----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 12268 | 0.67 | 0.413438 |
Target: 5'- cGCgaccGGuGCAUGGAacucgcacgcgacgGCGCGguGGUCCGCUg -3' miRNA: 3'- aCGa---CC-CGUACCU--------------CGUGU--CCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 16701 | 0.67 | 0.435279 |
Target: 5'- gGCggGGGCuUGGGGCuugcgACGGGUUUcaaGCCg -3' miRNA: 3'- aCGa-CCCGuACCUCG-----UGUCCAGG---UGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 18872 | 0.67 | 0.416248 |
Target: 5'- aGCgaaGGCugAUGGAGCcggGCgAGGUCCACa -3' miRNA: 3'- aCGac-CCG--UACCUCG---UG-UCCAGGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 19883 | 0.69 | 0.337256 |
Target: 5'- gGCUGGGC---GAGCGCgaAGGgCUACCg -3' miRNA: 3'- aCGACCCGuacCUCGUG--UCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 20017 | 0.67 | 0.435279 |
Target: 5'- aGCcGGGCAUGGAGaggaagccuuGCAGcGccugagccUCCGCCa -3' miRNA: 3'- aCGaCCCGUACCUCg---------UGUC-C--------AGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 22629 | 0.66 | 0.474792 |
Target: 5'- gGCggGGGCAcacgccUGGcGCGCAGGggCAUCa -3' miRNA: 3'- aCGa-CCCGU------ACCuCGUGUCCagGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 24479 | 0.66 | 0.49521 |
Target: 5'- gUGgaGGaCAUGGcGGCGguGG-CCACCa -3' miRNA: 3'- -ACgaCCcGUACC-UCGUguCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 26992 | 0.72 | 0.230489 |
Target: 5'- gGCUGGGCuaccgcgaGUGGuGCACGGG-CCuugguguGCCu -3' miRNA: 3'- aCGACCCG--------UACCuCGUGUCCaGG-------UGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 27615 | 0.67 | 0.454804 |
Target: 5'- cUGCgcGGuGUGUGGAGcCugGGGggcucgCCGCCa -3' miRNA: 3'- -ACGa-CC-CGUACCUC-GugUCCa-----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 31546 | 0.66 | 0.505568 |
Target: 5'- cGCUGGGCGca-GGCACccGUCUACg -3' miRNA: 3'- aCGACCCGUaccUCGUGucCAGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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