Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 48424 | 0.72 | 0.206342 |
Target: 5'- cGCUGGcuuccuccGCAUGGAcggcgaggccgcgaGCAUAGG-CCACCu -3' miRNA: 3'- aCGACC--------CGUACCU--------------CGUGUCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 47121 | 0.69 | 0.321253 |
Target: 5'- cGCUGGaCG-GGAGCA-AGGcCCACCu -3' miRNA: 3'- aCGACCcGUaCCUCGUgUCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 43734 | 0.68 | 0.406925 |
Target: 5'- cGC-GGGaCAcccGAGC-CGGGUCCGCCc -3' miRNA: 3'- aCGaCCC-GUac-CUCGuGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 43292 | 1.12 | 0.000235 |
Target: 5'- gUGCUGGGCAUGGAGCACAGGUCCACCa -3' miRNA: 3'- -ACGACCCGUACCUCGUGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 42729 | 0.69 | 0.359769 |
Target: 5'- gGCgUGGGCGUcGGGGCgauGCGGGcgcgguggacggcaUCCAUCg -3' miRNA: 3'- aCG-ACCCGUA-CCUCG---UGUCC--------------AGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 41453 | 0.69 | 0.362334 |
Target: 5'- aGUUGGcGCGcaaggcUGGGGCGCGGGUgaaguaCCGCg -3' miRNA: 3'- aCGACC-CGU------ACCUCGUGUCCA------GGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 41175 | 0.68 | 0.406925 |
Target: 5'- -cCUGGGCAaGGGGCucCAGcGUCCAg- -3' miRNA: 3'- acGACCCGUaCCUCGu-GUC-CAGGUgg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 40505 | 0.67 | 0.444981 |
Target: 5'- gGCcGcGGCccuUGGcccAGCGCAGGUUgGCCa -3' miRNA: 3'- aCGaC-CCGu--ACC---UCGUGUCCAGgUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 40333 | 0.66 | 0.504528 |
Target: 5'- gGCUGGcGCGUGccucaguGGGCGguGGgcaagCCGCUg -3' miRNA: 3'- aCGACC-CGUAC-------CUCGUguCCa----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 37668 | 0.7 | 0.275289 |
Target: 5'- gGCgaugGGGCAgccgacacgcccGGAGCGCGGcG-CCGCCg -3' miRNA: 3'- aCGa---CCCGUa-----------CCUCGUGUC-CaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 36667 | 0.66 | 0.516018 |
Target: 5'- ---aGGGCGUGGAGCACcuGcCCGa- -3' miRNA: 3'- acgaCCCGUACCUCGUGucCaGGUgg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 35062 | 0.71 | 0.249808 |
Target: 5'- -cCUGGGaguUGGGGCccuaGCGGGUCUGCCc -3' miRNA: 3'- acGACCCgu-ACCUCG----UGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 31546 | 0.66 | 0.505568 |
Target: 5'- cGCUGGGCGca-GGCACccGUCUACg -3' miRNA: 3'- aCGACCCGUaccUCGUGucCAGGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 27615 | 0.67 | 0.454804 |
Target: 5'- cUGCgcGGuGUGUGGAGcCugGGGggcucgCCGCCa -3' miRNA: 3'- -ACGa-CC-CGUACCUC-GugUCCa-----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 26992 | 0.72 | 0.230489 |
Target: 5'- gGCUGGGCuaccgcgaGUGGuGCACGGG-CCuugguguGCCu -3' miRNA: 3'- aCGACCCG--------UACCuCGUGUCCaGG-------UGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 24479 | 0.66 | 0.49521 |
Target: 5'- gUGgaGGaCAUGGcGGCGguGG-CCACCa -3' miRNA: 3'- -ACgaCCcGUACC-UCGUguCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 22629 | 0.66 | 0.474792 |
Target: 5'- gGCggGGGCAcacgccUGGcGCGCAGGggCAUCa -3' miRNA: 3'- aCGa-CCCGU------ACCuCGUGUCCagGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 20017 | 0.67 | 0.435279 |
Target: 5'- aGCcGGGCAUGGAGaggaagccuuGCAGcGccugagccUCCGCCa -3' miRNA: 3'- aCGaCCCGUACCUCg---------UGUC-C--------AGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 19883 | 0.69 | 0.337256 |
Target: 5'- gGCUGGGC---GAGCGCgaAGGgCUACCg -3' miRNA: 3'- aCGACCCGuacCUCGUG--UCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 18872 | 0.67 | 0.416248 |
Target: 5'- aGCgaaGGCugAUGGAGCcggGCgAGGUCCACa -3' miRNA: 3'- aCGac-CCG--UACCUCG---UG-UCCAGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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