miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11612 5' -58.1 NC_003085.1 + 40333 0.66 0.504528
Target:  5'- gGCUGGcGCGUGccucaguGGGCGguGGgcaagCCGCUg -3'
miRNA:   3'- aCGACC-CGUAC-------CUCGUguCCa----GGUGG- -5'
11612 5' -58.1 NC_003085.1 + 12268 0.67 0.413438
Target:  5'- cGCgaccGGuGCAUGGAacucgcacgcgacgGCGCGguGGUCCGCUg -3'
miRNA:   3'- aCGa---CC-CGUACCU--------------CGUGU--CCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 18872 0.67 0.416248
Target:  5'- aGCgaaGGCugAUGGAGCcggGCgAGGUCCACa -3'
miRNA:   3'- aCGac-CCG--UACCUCG---UG-UCCAGGUGg -5'
11612 5' -58.1 NC_003085.1 + 16701 0.67 0.435279
Target:  5'- gGCggGGGCuUGGGGCuugcgACGGGUUUcaaGCCg -3'
miRNA:   3'- aCGa-CCCGuACCUCG-----UGUCCAGG---UGG- -5'
11612 5' -58.1 NC_003085.1 + 2171 0.67 0.454804
Target:  5'- gUGCUGGaaGUGcGAaacuGcCACGGGUUCGCCg -3'
miRNA:   3'- -ACGACCcgUAC-CU----C-GUGUCCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 1332 0.67 0.454804
Target:  5'- cUGCgauGGCGcUGGAGUACGGacggcuUCCGCCu -3'
miRNA:   3'- -ACGac-CCGU-ACCUCGUGUCc-----AGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 27615 0.67 0.454804
Target:  5'- cUGCgcGGuGUGUGGAGcCugGGGggcucgCCGCCa -3'
miRNA:   3'- -ACGa-CC-CGUACCUC-GugUCCa-----GGUGG- -5'
11612 5' -58.1 NC_003085.1 + 11603 0.66 0.48495
Target:  5'- gGCaGGGCGgcgcgaaGGGGCuguGCAGGggcugCUACCa -3'
miRNA:   3'- aCGaCCCGUa------CCUCG---UGUCCa----GGUGG- -5'
11612 5' -58.1 NC_003085.1 + 24479 0.66 0.49521
Target:  5'- gUGgaGGaCAUGGcGGCGguGG-CCACCa -3'
miRNA:   3'- -ACgaCCcGUACC-UCGUguCCaGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 41175 0.68 0.406925
Target:  5'- -cCUGGGCAaGGGGCucCAGcGUCCAg- -3'
miRNA:   3'- acGACCCGUaCCUCGu-GUC-CAGGUgg -5'
11612 5' -58.1 NC_003085.1 + 43734 0.68 0.406925
Target:  5'- cGC-GGGaCAcccGAGC-CGGGUCCGCCc -3'
miRNA:   3'- aCGaCCC-GUac-CUCGuGUCCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 41453 0.69 0.362334
Target:  5'- aGUUGGcGCGcaaggcUGGGGCGCGGGUgaaguaCCGCg -3'
miRNA:   3'- aCGACC-CGU------ACCUCGUGUCCA------GGUGg -5'
11612 5' -58.1 NC_003085.1 + 3272 0.76 0.123817
Target:  5'- aGC-GGGCAUGGAGCcuACGauGUCCGCCu -3'
miRNA:   3'- aCGaCCCGUACCUCG--UGUc-CAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 48424 0.72 0.206342
Target:  5'- cGCUGGcuuccuccGCAUGGAcggcgaggccgcgaGCAUAGG-CCACCu -3'
miRNA:   3'- aCGACC--------CGUACCU--------------CGUGUCCaGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 26992 0.72 0.230489
Target:  5'- gGCUGGGCuaccgcgaGUGGuGCACGGG-CCuugguguGCCu -3'
miRNA:   3'- aCGACCCG--------UACCuCGUGUCCaGG-------UGG- -5'
11612 5' -58.1 NC_003085.1 + 35062 0.71 0.249808
Target:  5'- -cCUGGGaguUGGGGCccuaGCGGGUCUGCCc -3'
miRNA:   3'- acGACCCgu-ACCUCG----UGUCCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 47121 0.69 0.321253
Target:  5'- cGCUGGaCG-GGAGCA-AGGcCCACCu -3'
miRNA:   3'- aCGACCcGUaCCUCGUgUCCaGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 19883 0.69 0.337256
Target:  5'- gGCUGGGC---GAGCGCgaAGGgCUACCg -3'
miRNA:   3'- aCGACCCGuacCUCGUG--UCCaGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 701 0.69 0.353833
Target:  5'- gGCcucGGGCGcGGccugaGCAGGUCCACCc -3'
miRNA:   3'- aCGa--CCCGUaCCucg--UGUCCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 42729 0.69 0.359769
Target:  5'- gGCgUGGGCGUcGGGGCgauGCGGGcgcgguggacggcaUCCAUCg -3'
miRNA:   3'- aCG-ACCCGUA-CCUCG---UGUCC--------------AGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.