miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11612 5' -58.1 NC_003085.1 + 42729 0.69 0.359769
Target:  5'- gGCgUGGGCGUcGGGGCgauGCGGGcgcgguggacggcaUCCAUCg -3'
miRNA:   3'- aCG-ACCCGUA-CCUCG---UGUCC--------------AGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 41453 0.69 0.362334
Target:  5'- aGUUGGcGCGcaaggcUGGGGCGCGGGUgaaguaCCGCg -3'
miRNA:   3'- aCGACC-CGU------ACCUCGUGUCCA------GGUGg -5'
11612 5' -58.1 NC_003085.1 + 43734 0.68 0.406925
Target:  5'- cGC-GGGaCAcccGAGC-CGGGUCCGCCc -3'
miRNA:   3'- aCGaCCC-GUac-CUCGuGUCCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 3817 0.69 0.362334
Target:  5'- gUGCUGGGCcucacAGCcaaACAGGUgCGCCu -3'
miRNA:   3'- -ACGACCCGuacc-UCG---UGUCCAgGUGG- -5'
11612 5' -58.1 NC_003085.1 + 8186 0.69 0.362334
Target:  5'- cGCUGGGCGcuGuGCAU-GGcCCGCCa -3'
miRNA:   3'- aCGACCCGUacCuCGUGuCCaGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 8673 0.68 0.388678
Target:  5'- gGCcuUGGGCGccGGGGUGCc-GUCCGCCa -3'
miRNA:   3'- aCG--ACCCGUa-CCUCGUGucCAGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 20017 0.67 0.435279
Target:  5'- aGCcGGGCAUGGAGaggaagccuuGCAGcGccugagccUCCGCCa -3'
miRNA:   3'- aCGaCCCGUACCUCg---------UGUC-C--------AGGUGG- -5'
11612 5' -58.1 NC_003085.1 + 40505 0.67 0.444981
Target:  5'- gGCcGcGGCccuUGGcccAGCGCAGGUUgGCCa -3'
miRNA:   3'- aCGaC-CCGu--ACC---UCGUGUCCAGgUGG- -5'
11612 5' -58.1 NC_003085.1 + 22629 0.66 0.474792
Target:  5'- gGCggGGGCAcacgccUGGcGCGCAGGggCAUCa -3'
miRNA:   3'- aCGa-CCCGU------ACCuCGUGUCCagGUGG- -5'
11612 5' -58.1 NC_003085.1 + 31546 0.66 0.505568
Target:  5'- cGCUGGGCGca-GGCACccGUCUACg -3'
miRNA:   3'- aCGACCCGUaccUCGUGucCAGGUGg -5'
11612 5' -58.1 NC_003085.1 + 36667 0.66 0.516018
Target:  5'- ---aGGGCGUGGAGCACcuGcCCGa- -3'
miRNA:   3'- acgaCCCGUACCUCGUGucCaGGUgg -5'
11612 5' -58.1 NC_003085.1 + 37668 0.7 0.275289
Target:  5'- gGCgaugGGGCAgccgacacgcccGGAGCGCGGcG-CCGCCg -3'
miRNA:   3'- aCGa---CCCGUa-----------CCUCGUGUC-CaGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.