Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 40505 | 0.67 | 0.444981 |
Target: 5'- gGCcGcGGCccuUGGcccAGCGCAGGUUgGCCa -3' miRNA: 3'- aCGaC-CCGu--ACC---UCGUGUCCAGgUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 2171 | 0.67 | 0.454804 |
Target: 5'- gUGCUGGaaGUGcGAaacuGcCACGGGUUCGCCg -3' miRNA: 3'- -ACGACCcgUAC-CU----C-GUGUCCAGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 27615 | 0.67 | 0.454804 |
Target: 5'- cUGCgcGGuGUGUGGAGcCugGGGggcucgCCGCCa -3' miRNA: 3'- -ACGa-CC-CGUACCUC-GugUCCa-----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 1332 | 0.67 | 0.454804 |
Target: 5'- cUGCgauGGCGcUGGAGUACGGacggcuUCCGCCu -3' miRNA: 3'- -ACGac-CCGU-ACCUCGUGUCc-----AGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 22629 | 0.66 | 0.474792 |
Target: 5'- gGCggGGGCAcacgccUGGcGCGCAGGggCAUCa -3' miRNA: 3'- aCGa-CCCGU------ACCuCGUGUCCagGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 11603 | 0.66 | 0.48495 |
Target: 5'- gGCaGGGCGgcgcgaaGGGGCuguGCAGGggcugCUACCa -3' miRNA: 3'- aCGaCCCGUa------CCUCG---UGUCCa----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 24479 | 0.66 | 0.49521 |
Target: 5'- gUGgaGGaCAUGGcGGCGguGG-CCACCa -3' miRNA: 3'- -ACgaCCcGUACC-UCGUguCCaGGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 40333 | 0.66 | 0.504528 |
Target: 5'- gGCUGGcGCGUGccucaguGGGCGguGGgcaagCCGCUg -3' miRNA: 3'- aCGACC-CGUAC-------CUCGUguCCa----GGUGG- -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 31546 | 0.66 | 0.505568 |
Target: 5'- cGCUGGGCGca-GGCACccGUCUACg -3' miRNA: 3'- aCGACCCGUaccUCGUGucCAGGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 36667 | 0.66 | 0.516018 |
Target: 5'- ---aGGGCGUGGAGCACcuGcCCGa- -3' miRNA: 3'- acgaCCCGUACCUCGUGucCaGGUgg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 6012 | 0.66 | 0.516018 |
Target: 5'- gGCUGGGCGcGGAuGUACGcccGGacgCCGCg -3' miRNA: 3'- aCGACCCGUaCCU-CGUGU---CCa--GGUGg -5' |
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11612 | 5' | -58.1 | NC_003085.1 | + | 6421 | 0.66 | 0.526553 |
Target: 5'- uUGCUGGgGCAgggguggcgaGGAGUACGGGaCUugaACCc -3' miRNA: 3'- -ACGACC-CGUa---------CCUCGUGUCCaGG---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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