Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 8186 | 0.69 | 0.362334 |
Target: 5'- cGCUGGGCGcuGuGCAU-GGcCCGCCa -3' miRNA: 3'- aCGACCCGUacCuCGUGuCCaGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 3817 | 0.69 | 0.362334 |
Target: 5'- gUGCUGGGCcucacAGCcaaACAGGUgCGCCu -3' miRNA: 3'- -ACGACCCGuacc-UCG---UGUCCAgGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 42729 | 0.69 | 0.359769 |
Target: 5'- gGCgUGGGCGUcGGGGCgauGCGGGcgcgguggacggcaUCCAUCg -3' miRNA: 3'- aCG-ACCCGUA-CCUCG---UGUCC--------------AGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 701 | 0.69 | 0.353833 |
Target: 5'- gGCcucGGGCGcGGccugaGCAGGUCCACCc -3' miRNA: 3'- aCGa--CCCGUaCCucg--UGUCCAGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 19883 | 0.69 | 0.337256 |
Target: 5'- gGCUGGGC---GAGCGCgaAGGgCUACCg -3' miRNA: 3'- aCGACCCGuacCUCGUG--UCCaGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 47121 | 0.69 | 0.321253 |
Target: 5'- cGCUGGaCG-GGAGCA-AGGcCCACCu -3' miRNA: 3'- aCGACCcGUaCCUCGUgUCCaGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 37668 | 0.7 | 0.275289 |
Target: 5'- gGCgaugGGGCAgccgacacgcccGGAGCGCGGcG-CCGCCg -3' miRNA: 3'- aCGa---CCCGUa-----------CCUCGUGUC-CaGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 35062 | 0.71 | 0.249808 |
Target: 5'- -cCUGGGaguUGGGGCccuaGCGGGUCUGCCc -3' miRNA: 3'- acGACCCgu-ACCUCG----UGUCCAGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 26992 | 0.72 | 0.230489 |
Target: 5'- gGCUGGGCuaccgcgaGUGGuGCACGGG-CCuugguguGCCu -3' miRNA: 3'- aCGACCCG--------UACCuCGUGUCCaGG-------UGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 48424 | 0.72 | 0.206342 |
Target: 5'- cGCUGGcuuccuccGCAUGGAcggcgaggccgcgaGCAUAGG-CCACCu -3' miRNA: 3'- aCGACC--------CGUACCU--------------CGUGUCCaGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 3272 | 0.76 | 0.123817 |
Target: 5'- aGC-GGGCAUGGAGCcuACGauGUCCGCCu -3' miRNA: 3'- aCGaCCCGUACCUCG--UGUc-CAGGUGG- -5' |
|||||||
11612 | 5' | -58.1 | NC_003085.1 | + | 43292 | 1.12 | 0.000235 |
Target: 5'- gUGCUGGGCAUGGAGCACAGGUCCACCa -3' miRNA: 3'- -ACGACCCGUACCUCGUGUCCAGGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home