miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 5' -52.1 NC_003102.1 + 10574 0.82 0.235972
Target:  5'- gAACCUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 10650 0.86 0.135045
Target:  5'- aAACCUGGCCGACUUUUCGUGUUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 10732 1.03 0.011149
Target:  5'- gAACCUGGCCGACUUUUCGUGCUGAAUc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGACUUA- -5'
11651 5' -52.1 NC_003102.1 + 10815 0.91 0.071077
Target:  5'- uAACCUGGCCGACUUUUCGUGCUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 23415 0.75 0.593232
Target:  5'- cGGCCUGGCCGACUguuacgGUGCcGAAUu -3'
miRNA:   3'- -UUGGACCGGCUGAaaag--CACGaCUUA- -5'
11651 5' -52.1 NC_003102.1 + 25836 0.69 0.863452
Target:  5'- gAACgUGGCCGACUUUUCGUa------ -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 25968 0.82 0.235972
Target:  5'- gAACCUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 26048 0.82 0.242089
Target:  5'- aAACCUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 26107 0.87 0.120997
Target:  5'- gAACCUGGCCGACUUUUUGUGCUc--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 26190 0.91 0.067154
Target:  5'- gAACCUGGCCGACUUUUCGUGCUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 26267 0.87 0.131398
Target:  5'- gAACCUGGCCGACUUUUCGUGUUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 26362 0.68 0.900411
Target:  5'- gAACgUGGCCGACUUUUCGaGaaagaUGAc- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCaCg----ACUua -5'
11651 5' -52.1 NC_003102.1 + 36211 0.74 0.636466
Target:  5'- gAACCUGGCCGACUUUUUGUa------ -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 36230 0.67 0.936211
Target:  5'- gAACgUGGCCGACUUUUCaUGUa---- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGcACGacuua -5'
11651 5' -52.1 NC_003102.1 + 42895 0.79 0.366908
Target:  5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5'
11651 5' -52.1 NC_003102.1 + 54314 0.68 0.907041
Target:  5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUGUUa--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAA-----------GCACGAcuua -5'
11651 5' -52.1 NC_003102.1 + 54594 0.69 0.878978
Target:  5'- gAACCUGGCCGACUUUUUu--UUGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacGACUua -5'
11651 5' -52.1 NC_003102.1 + 55993 0.71 0.792663
Target:  5'- gAACCUGGCCGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 56085 0.67 0.946014
Target:  5'- gAACCUGGCCGACUUUUUa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 61379 0.74 0.647288
Target:  5'- aAACCUGGCCGACUUUUUGUa------ -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.