Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 5' | -52.1 | NC_003102.1 | + | 55993 | 0.71 | 0.792663 |
Target: 5'- gAACCUGGCCGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 89508 | 0.71 | 0.767185 |
Target: 5'- gAACgUGGCUGACUUUUCGUagaaucugguggacaGUUGAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA---------------CGACUUa -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 61379 | 0.74 | 0.647288 |
Target: 5'- aAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 36211 | 0.74 | 0.636466 |
Target: 5'- gAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 89482 | 0.74 | 0.62564 |
Target: 5'- aAACCcGGCCGACUUUUCGUGg----- -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 97839 | 0.74 | 0.62564 |
Target: 5'- gAACgUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 23415 | 0.75 | 0.593232 |
Target: 5'- cGGCCUGGCCGACUguuacgGUGCcGAAUu -3' miRNA: 3'- -UUGGACCGGCUGAaaag--CACGaCUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 121813 | 0.75 | 0.582482 |
Target: 5'- gAACCUGGCCGACUUUUCGa------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67308 | 0.77 | 0.478349 |
Target: 5'- gAACCUGGCCGACUUUUCGauaaGCg---- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa---CGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67210 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUUCGauauucauaacgUGUUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC------------ACGACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104636 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUU--UGUUGAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAgcACGACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76352 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67398 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 121893 | 0.79 | 0.384213 |
Target: 5'- gAACCUGGCCGACUUUUCGUaCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 42895 | 0.79 | 0.366908 |
Target: 5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 112569 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104516 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26048 | 0.82 | 0.242089 |
Target: 5'- aAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76479 | 0.82 | 0.242089 |
Target: 5'- gAACCUGGCCGACUUUUCGuUGauuguaUGAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC-ACg-----ACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 10574 | 0.82 | 0.235972 |
Target: 5'- gAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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